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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Selenomonas noxia (HMT-130)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas noxia
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.5670.4390.0210.0000.0000.1840.0210.0000.0000.0000.0000.0000.0000.0230.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp1.6821.2190.0420.0000.0000.4510.0150.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev1.0520.8200.0720.0000.0000.4300.2540.0000.0000.0000.0000.0000.0000.1530.0000.0000.0000.000
Prev(%)79.47073.51020.9790.0000.00066.92314.5830.0000.0000.0000.0000.0000.0003.6870.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Because HMT-920 is not present individually, all equidistant reads were assigned to HMT-130 at these sites (SAL,SUPP).

Reads equidistant to HMT-130 and HMT-920 were assigned to each taxon in proportion to the abundance of HMT-130 and HMT-920 individually at this body site (SUBP).

Some of the reads equidistant from these taxa (130-920-937) are included in HMT-130 because they are too close to differentiate at this site (SUPP).

SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.6770.6380.0580.0880.0000.2860.0000.0220.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp2.0651.9240.0790.2030.0000.6950.0000.0410.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev1.0860.9330.3060.3030.0000.5270.0000.1080.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Prev(%)84.19878.78020.74139.2060.00079.1670.00023.3580.0000.0000.0000.0000.0000.0000.0000.0000.0000.000

Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.2080.8950.0140.0310.0110.0040.0040.0100.0010.001
10thp0.0000.0080.0000.0000.0000.0000.0000.0000.0000.000
90thp0.6932.2520.0210.0570.0300.0210.0150.0030.0050.001
Stdev0.3931.4130.0480.0770.0200.0080.0070.0480.0030.002
Prev(%)79.73094.11841.86074.28646.42950.00036.36419.35522.50010.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.3470.5201.2110.0300.0220.0000.1100.0000.0000.0010.0010.0000.0000.0000.0000.1570.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp1.2171.4803.9580.0140.0200.0000.2760.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.5370.8221.6010.1160.1190.0000.2200.0000.0000.0110.0170.0000.0000.0000.0000.5880.0000.001
Prev(%)83.33373.99075.00017.64713.0320.00050.0000.0000.0001.6430.4500.0000.0000.0000.0007.1430.0000.182

Eren V1-V3 www.pnas.org
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.8170.6750.0220.0230.0080.2210.0170.0090.0020.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp2.5691.6490.0290.0720.0250.6920.0410.0300.0000.000
Stdev1.5511.2740.0830.0500.0250.3240.0590.0230.0140.004
Prev(%)71.42974.02615.58433.76618.18268.83118.18219.4815.1951.299

Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to S. flueggei, S. noxia, and S. sp. HMT 388 were assigned one-third to each taxon.



SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.2300.2510.0040.0150.0050.0970.0110.0100.0020.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.6190.6740.0010.0420.0140.1950.0280.0250.0070.000
Stdev0.3150.3120.0250.0350.0170.1710.0310.0320.0060.001
Prev(%)84.45980.40510.13541.89225.67681.75733.10834.45915.5410.699