HOMD ::species::Selenomonas noxia

Species: Selenomonas noxia (HMT-130)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas noxia

LINKS: Ecology Home | HMT-130: Body Sites Data | HMT-130: Taxon Description | Life Page: Selenomonas noxia

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.567	0.439	0.021	0.000	0.000	0.184	0.021	0.000	0.000	0.000	0.000	0.000	0.000	0.023	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.682	1.219	0.042	0.000	0.000	0.451	0.015	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.052	0.820	0.072	0.000	0.000	0.430	0.254	0.000	0.000	0.000	0.000	0.000	0.000	0.153	0.000	0.000	0.000	0.000
Prev(%)	79.470	73.510	20.979	0.000	0.000	66.923	14.583	0.000	0.000	0.000	0.000	0.000	0.000	3.687	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
Because HMT-920 is not present individually, all equidistant reads were assigned to HMT-130 at these sites (SAL,SUPP).

Reads equidistant to HMT-130 and HMT-920 were assigned to each taxon in proportion to the abundance of HMT-130 and HMT-920 individually at this body site (SUBP).

Some of the reads equidistant from these taxa (130-920-937) are included in HMT-130 because they are too close to differentiate at this site (SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.677	0.638	0.058	0.088	0.000	0.286	0.000	0.022	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.065	1.924	0.079	0.203	0.000	0.695	0.000	0.041	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.086	0.933	0.306	0.303	0.000	0.527	0.000	0.108	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	84.198	78.780	20.741	39.206	0.000	79.167	0.000	23.358	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.208	0.895	0.014	0.031	0.011	0.004	0.004	0.010	0.001	0.001
10^thp	0.000	0.008	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.693	2.252	0.021	0.057	0.030	0.021	0.015	0.003	0.005	0.001
Stdev	0.393	1.413	0.048	0.077	0.020	0.008	0.007	0.048	0.003	0.002
Prev(%)	79.730	94.118	41.860	74.286	46.429	50.000	36.364	19.355	22.500	10.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.347	0.520	1.211	0.030	0.022	0.000	0.110	0.000	0.000	0.001	0.001	0.000	0.000	0.000	0.000	0.157	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.217	1.480	3.958	0.014	0.020	0.000	0.276	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.537	0.822	1.601	0.116	0.119	0.000	0.220	0.000	0.000	0.011	0.017	0.000	0.000	0.000	0.000	0.588	0.000	0.001
Prev(%)	83.333	73.990	75.000	17.647	13.032	0.000	50.000	0.000	0.000	1.643	0.450	0.000	0.000	0.000	0.000	7.143	0.000	0.182

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.817	0.675	0.022	0.023	0.008	0.221	0.017	0.009	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.569	1.649	0.029	0.072	0.025	0.692	0.041	0.030	0.000	0.000
Stdev	1.551	1.274	0.083	0.050	0.025	0.324	0.059	0.023	0.014	0.004
Prev(%)	71.429	74.026	15.584	33.766	18.182	68.831	18.182	19.481	5.195	1.299

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to S. flueggei, S. noxia, and S. sp. HMT 388 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.230	0.251	0.004	0.015	0.005	0.097	0.011	0.010	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.619	0.674	0.001	0.042	0.014	0.195	0.028	0.025	0.007	0.000
Stdev	0.315	0.312	0.025	0.035	0.017	0.171	0.031	0.032	0.006	0.001
Prev(%)	84.459	80.405	10.135	41.892	25.676	81.757	33.108	34.459	15.541	0.699

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