HOMD ::Domain:Bacteria

Domain: Bacteria

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Full Lineage: Bacteria Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Bacteria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	98.782	99.267	99.559	99.702	99.322	98.863	99.430	99.367	99.865	1.887
10^thp	97.630	98.489	99.734	99.660	98.482	97.087	98.972	99.544	99.627	0.033
90^thp	99.996	99.972	100.002	99.980	100.000	99.947	100.009	99.998	100.105	4.407
Stdev	2.891	1.307	1.841	0.861	1.848	2.125	1.524	3.005	0.725	5.543
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	96.104

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	98.495	99.366	99.768	99.534	98.979	98.939	99.344	99.359	99.907	0.791
10^thp	97.158	98.389	99.801	99.039	97.795	97.393	98.479	99.175	99.806	0.000
90^thp	99.975	99.993	100.005	100.001	99.990	99.938	99.992	100.000	100.003	2.628
Stdev	4.827	0.963	1.377	1.931	3.309	1.648	1.448	2.063	0.178	1.455
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	83.217

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	97.142	95.287	96.502	97.157	98.286	96.417	97.758	97.487	94.210	96.761	97.064	97.124	81.624	84.063	90.291	94.362	95.911	24.261
10^thp	94.312	91.050	92.585	93.930	96.400	93.217	95.940	95.755	91.549	94.216	95.397	94.119	55.494	61.319	75.476	85.212	91.598	6.678
90^thp	99.441	98.990	99.719	99.708	99.767	99.628	99.712	99.460	97.399	99.696	99.877	99.885	98.586	99.059	99.520	99.789	99.942	46.972
Stdev	2.495	2.965	3.315	2.601	2.314	8.160	5.064	2.903	2.400	7.383	7.973	7.053	19.870	19.093	12.234	8.267	9.562	16.455
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	98.696	98.530	98.195	98.355	98.724	98.837	99.114	98.860	97.322	97.025	96.760	97.209	79.031	85.073	93.945	97.357	97.302	6.391
10^thp	97.025	96.863	96.355	97.826	97.261	97.176	98.695	97.821	94.625	94.462	94.431	91.725	40.395	59.641	82.175	93.468	95.011	0.816
90^thp	99.934	99.818	99.866	99.934	100.000	99.909	100.000	99.923	99.289	99.927	99.956	99.970	99.544	99.389	99.944	100.000	100.000	12.574
Stdev	2.978	1.781	2.767	5.914	5.202	1.646	3.094	2.173	1.774	8.151	10.780	6.683	24.864	20.989	9.630	5.799	8.141	10.342
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	99.958	99.984	99.999	99.994	100.001	99.999	99.997	99.999	100.000	99.921
10^thp	99.888	99.940	99.988	99.981	99.991	99.986	99.983	99.988	99.992	99.845
90^thp	100.010	100.012	100.011	100.011	100.014	100.010	100.010	100.013	100.009	99.987
Stdev	0.102	0.036	0.010	0.023	0.008	0.011	0.010	0.010	0.007	0.063
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	79.746	81.358	76.978	83.525	92.713	96.590	79.089	91.785	91.320	92.349	79.106	82.986	86.501	80.820	99.287	97.991	98.781	71.327
10^thp	65.298	68.555	66.064	58.558	84.515	96.590	67.219	86.545	85.368	85.110	54.051	58.104	67.823	80.820	99.550	94.867	97.279	46.689
90^thp	91.196	91.370	88.877	98.680	98.505	96.590	89.551	97.130	97.618	98.080	98.987	97.032	98.146	80.820	100.000	100.000	100.000	91.912
Stdev	10.439	10.252	11.473	15.988	6.772	0.000	11.341	4.868	4.915	5.707	18.949	23.803	20.365	0.000	1.813	4.994	3.866	17.814
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	99.550	100.000	100.000	100.000	100.000	100.000	100.000	100.000

[Phylum:Actinomycetota]	[Phylum:Bacillota]	[Phylum:Bacteroidota]	[Phylum:Chlamydiota]	[Phylum:Chlorobiota]
[Phylum:Chloroflexota]	[Phylum:Cyanobacteriota]	[Phylum:Eremiobacterota]	[Phylum:Fusobacteriota]	[Phylum:Mycoplasmatota]
[Phylum:Patescibacteria]	[Phylum:Pseudomonadota]	[Phylum:Spirochaetota]	[Phylum:Synergistota]	[Phylum:Verrucomicrobiota]

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