HOMD ::klass::Negativicutes

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Class: Negativicutes

Download Options

Full Lineage: Bacteria; Firmicutes; Negativicutes
Lower rank member(s): [Order:Veillonellales] [Order:Selenomonadales]
Genera:

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	5.461	4.356	4.831	3.571	6.330	15.790	11.247	10.443	11.771	1.730
10^thp	0.917	0.512	0.268	0.394	2.278	6.546	4.144	2.815	5.193	0.000
90^thp	12.648	9.455	13.248	8.049	12.952	26.062	18.799	19.261	16.987	4.183
Stdev	5.507	4.744	5.311	3.544	4.040	7.160	6.422	5.778	5.119	5.528
Prev	98.701	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	55.844

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	7.057	5.946	5.072	3.448	6.536	15.936	9.929	8.640	10.773	0.683
10^thp	1.725	1.370	0.254	0.588	1.859	5.868	3.603	2.836	4.036	0.000
90^thp	15.012	10.794	12.951	7.675	12.784	25.188	16.402	15.959	17.921	2.625
Stdev	5.960	4.605	5.505	3.028	4.387	7.661	5.703	5.036	5.398	1.420
Prev	100.000	100.000	99.324	100.000	100.000	100.000	100.000	100.000	100.000	56.643

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	4.944	7.011	3.296	4.502	4.525	4.176	8.012	5.666	6.066	0.030
10^thp	0.234	0.769	0.076	0.304	0.677	0.661	2.561	1.009	0.155	0.000
90^thp	12.127	16.685	9.487	11.253	8.451	9.795	13.742	10.296	11.932	0.133
Stdev	6.464	6.430	4.191	5.297	3.027	3.469	5.363	3.667	4.432	0.063
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	25.000