HOMD ::klass::Negativicutes

Class: Negativicutes

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Negativicutes
Lower rank member(s): [Order:Selenomonadales] [Order:Veillonellales]
Genera:

LINKS: Ecology Home | Life Page: Negativicutes

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	6.103	4.890	5.877	4.411	7.113	15.503	11.742	11.386	12.143	0.272	0.184	0.107	0.609	0.740	1.339	1.019	1.127	1.337
10^thp	1.185	0.484	0.271	0.712	2.044	5.648	4.329	4.371	6.506	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	13.955	9.650	16.269	8.738	14.239	27.341	19.493	18.763	18.125	0.724	0.252	0.240	1.919	1.763	3.899	0.845	0.908	2.474
Stdev	5.571	4.764	6.403	4.357	4.631	8.220	6.035	6.217	4.790	0.652	0.842	0.384	1.096	1.503	3.962	3.585	4.132	5.529
Prev(%)	100.000	99.338	99.301	100.000	100.000	99.231	99.702	100.000	100.000	70.667	53.736	46.742	68.966	66.359	47.887	45.946	28.947	34.641

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.158	6.508	11.082	7.931	13.171	21.494	16.079	14.073	16.531	0.660	0.837	0.712	1.987	2.042	1.111	0.557	1.016	0.977
10^thp	1.832	0.843	0.669	1.427	4.481	8.408	5.135	4.493	6.899	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	16.830	13.960	28.257	17.891	25.130	37.912	30.225	25.138	29.521	1.695	1.721	1.381	4.159	5.734	3.341	0.034	1.157	2.849
Stdev	7.022	5.242	11.188	7.453	8.736	11.688	9.632	8.888	9.226	1.493	2.657	2.176	3.763	3.092	3.223	1.998	4.005	2.673
Prev(%)	99.753	100.000	99.012	99.752	100.000	100.000	100.000	100.000	100.000	82.375	67.834	64.815	86.207	88.667	64.368	13.115	25.654	42.579

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.944	7.011	3.296	4.502	4.525	4.176	8.012	5.666	6.066	0.030
10^thp	0.234	0.769	0.076	0.304	0.677	0.661	2.561	1.009	0.155	0.000
90^thp	12.127	16.685	9.487	11.253	8.451	9.795	13.742	10.296	11.932	0.133
Stdev	6.464	6.430	4.191	5.297	3.027	3.469	5.363	3.667	4.432	0.063
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	25.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	5.541	5.199	9.066	7.616	5.823	3.720	12.424	12.344	13.289	14.790	0.394	0.152	0.014	0.820	0.326	0.614	0.859	0.900
10^thp	1.274	0.775	1.860	0.492	0.660	3.720	6.956	5.010	3.044	7.985	0.000	0.000	0.000	0.820	0.000	0.000	0.000	0.000
90^thp	9.732	10.685	16.509	12.194	12.770	3.720	19.892	23.445	21.752	22.440	0.147	0.216	0.020	0.820	1.410	0.397	2.080	2.623
Stdev	4.063	4.179	6.778	7.729	5.291	0.000	5.974	8.003	7.035	5.785	2.221	0.571	0.048	0.000	0.746	2.084	3.531	2.054
Prev(%)	100.000	99.495	100.000	94.118	99.468	100.000	100.000	100.000	100.000	99.531	19.820	33.333	18.750	100.000	18.182	28.571	24.242	64.545

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.461	4.356	4.831	3.571	6.330	15.790	11.247	10.443	11.771	1.730
10^thp	0.917	0.512	0.268	0.394	2.278	6.546	4.144	2.815	5.193	0.000
90^thp	12.648	9.455	13.248	8.049	12.952	26.062	18.799	19.261	16.987	4.183
Stdev	5.507	4.744	5.311	3.544	4.040	7.160	6.422	5.778	5.119	5.528
Prev(%)	98.701	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	55.844

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.057	5.946	5.072	3.448	6.536	15.936	9.929	8.640	10.773	0.683
10^thp	1.725	1.370	0.254	0.588	1.859	5.868	3.603	2.836	4.036	0.000
90^thp	15.012	10.794	12.951	7.675	12.784	25.188	16.402	15.959	17.921	2.625
Stdev	5.960	4.605	5.505	3.028	4.387	7.661	5.703	5.036	5.398	1.420
Prev(%)	100.000	100.000	99.324	100.000	100.000	100.000	100.000	100.000	100.000	56.643

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