HOMD ::species::Porphyromonas catoniae

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Porphyromonas catoniae

Download Options

Full Lineage: Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas catoniae

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)	No Notes

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.337	0.375	0.158	0.058	0.019	0.098	0.012	0.023	0.004	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.893	1.056	0.442	0.129	0.043	0.262	0.028	0.047	0.012	0.000
Stdev	0.471	0.460	0.351	0.165	0.038	0.118	0.032	0.064	0.011	0.000
Prev	81.757	87.162	58.784	69.595	62.162	85.135	37.162	49.324	30.405	0.699

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.205	0.377	0.029	0.043	0.049	0.050	0.011	0.018	0.008	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.386	1.209	0.069	0.076	0.088	0.145	0.024	0.045	0.027	0.000
Stdev	0.557	0.826	0.066	0.138	0.133	0.096	0.020	0.041	0.018	0.000
Prev	64.865	79.412	65.116	71.429	75.000	80.000	54.545	64.516	50.000	0.000