HOMD ::klass::Bacteroidia

Class: Bacteroidia

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota; Bacteroidia
Lower rank member(s): [Order:Bacteroidales]
Genera:

LINKS: Ecology Home | Life Page: Bacteroidia

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.823	4.622	9.336	4.555	11.253	17.012	17.885	17.761	13.647	0.455	0.234	0.088	0.610	0.760	0.846	0.779	0.591	0.022
10^thp	0.726	0.203	0.147	0.534	3.393	8.281	7.246	7.196	6.006	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	20.496	10.539	27.432	10.164	18.625	27.295	28.766	28.897	21.184	1.167	0.392	0.149	1.548	1.874	1.142	0.699	0.163	0.000
Stdev	8.091	4.738	10.786	4.773	6.110	8.341	8.337	8.343	5.835	1.216	1.069	0.512	1.476	1.639	3.173	3.850	3.459	0.271
Prev(%)	100.000	98.013	97.902	98.630	100.000	99.231	99.702	100.000	100.000	70.333	55.172	45.042	62.644	64.516	59.155	44.595	34.211	0.654

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	12.655	5.294	17.598	8.731	12.226	19.123	14.823	18.833	11.211	0.260	0.719	0.443	1.550	1.195	1.045	0.380	0.586	0.000
10^thp	1.335	0.209	0.273	1.101	3.472	8.458	5.173	7.230	3.137	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	27.102	13.160	46.504	19.559	22.065	32.326	26.905	31.815	20.879	0.452	0.630	0.551	2.769	2.608	1.630	0.316	0.182	0.000
Stdev	10.002	5.461	18.446	8.220	7.546	9.090	8.430	10.108	7.319	0.903	2.882	1.663	5.081	3.229	3.458	2.300	3.921	0.000
Prev(%)	100.000	98.537	96.296	99.752	99.744	100.000	100.000	100.000	100.000	54.023	48.726	46.605	64.828	66.667	64.368	35.519	25.654	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	12.175	5.803	5.438	5.837	12.703	19.120	20.185	21.274	16.148	0.054
10^thp	0.667	0.511	0.118	0.123	1.689	1.730	7.816	7.602	0.430	0.000
90^thp	27.653	13.280	13.106	15.914	26.836	42.886	30.882	38.207	30.432	0.156
Stdev	10.379	5.179	6.834	6.193	11.274	16.019	9.453	12.097	11.039	0.103
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	40.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	9.359	5.261	18.322	4.876	4.583	11.910	23.511	19.716	26.472	15.416	2.676	0.084	0.107	4.640	1.064	1.113	2.708	62.403
10^thp	2.543	0.390	5.421	0.078	0.300	11.910	14.451	7.480	13.598	7.065	0.000	0.000	0.000	4.640	0.000	0.000	0.000	29.833
90^thp	18.570	12.585	32.583	6.342	11.125	11.910	35.289	29.410	45.214	25.145	5.709	0.317	0.337	4.640	2.110	2.307	6.101	88.780
Stdev	5.931	5.040	10.538	9.407	5.085	0.000	9.449	8.665	13.212	7.100	9.542	0.169	0.269	0.000	2.698	3.236	9.418	21.973
Prev(%)	100.000	98.485	100.000	94.118	98.936	100.000	100.000	100.000	100.000	100.000	42.793	50.000	40.625	100.000	63.636	35.714	44.444	100.000

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	8.743	4.140	8.538	5.265	10.148	15.580	13.476	14.432	13.452	0.010
10^thp	0.469	0.089	0.043	0.646	3.589	8.425	6.054	6.207	5.104	0.000
90^thp	18.863	8.771	23.261	13.656	17.942	24.106	20.500	25.837	23.222	0.039
Stdev	8.057	4.264	10.617	4.820	5.857	6.614	6.507	7.847	7.142	0.021
Prev(%)	100.000	96.104	94.805	100.000	100.000	100.000	100.000	100.000	100.000	25.974

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	17.862	9.348	12.923	7.901	14.029	24.600	20.590	20.400	18.088	0.004
10^thp	2.861	1.317	0.138	1.467	4.690	12.778	8.948	8.085	7.304	0.000
90^thp	33.570	17.087	33.340	18.113	25.070	36.505	34.671	36.285	28.893	0.014
Stdev	12.009	7.206	13.590	6.688	7.981	9.455	10.081	11.244	8.377	0.013
Prev(%)	100.000	100.000	98.649	100.000	100.000	100.000	100.000	100.000	100.000	14.685

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