HOMD ::Family:Porphyromonadaceae

Family: Porphyromonadaceae

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Genus:Porphyromonas]

LINKS: Ecology Home | Life Page: Porphyromonadaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.825	2.133	3.892	2.985	3.294	4.865	2.639	3.591	3.938	0.003
10^thp	0.028	0.000	0.000	0.116	0.102	0.088	0.024	0.237	0.024	0.000
90^thp	8.040	4.996	13.502	7.828	8.140	11.769	7.491	8.169	11.631	0.007
Stdev	3.856	3.023	5.696	3.683	3.389	5.069	3.218	3.672	5.966	0.012
Prev(%)	94.805	85.714	84.416	98.701	93.506	93.506	92.208	96.104	92.208	11.688

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.680	3.871	4.083	3.634	3.814	5.754	4.031	4.579	4.381	0.001
10^thp	0.206	0.112	0.011	0.342	0.240	0.882	0.121	0.364	0.037	0.000
90^thp	10.688	9.362	11.581	8.172	8.234	11.878	10.341	10.272	12.257	0.000
Stdev	4.901	3.531	6.192	4.318	3.591	4.645	4.825	4.882	5.564	0.006
Prev(%)	98.649	94.595	89.865	99.324	98.649	100.000	95.946	98.649	95.946	5.594

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.472	2.226	2.719	2.436	2.885	3.950	2.949	3.618	2.957	0.088	0.115	0.043	0.159	0.286	0.026	0.000	0.000	0.000
10^thp	0.051	0.033	0.001	0.085	0.084	0.252	0.056	0.246	0.006	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	6.395	5.866	8.382	5.498	7.623	8.619	8.436	9.746	9.551	0.188	0.119	0.039	0.343	0.602	0.031	0.000	0.000	0.000
Stdev	3.038	2.881	4.160	3.415	3.355	4.299	3.742	3.913	4.376	0.332	0.699	0.418	0.455	0.960	0.105	0.000	0.000	0.000
Prev(%)	95.364	94.702	89.510	96.575	95.973	95.385	94.643	98.000	90.323	38.667	35.057	22.946	37.356	41.014	19.718	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.223	1.973	5.672	4.873	5.321	5.809	4.074	5.719	4.276	0.108	0.456	0.304	1.011	0.871	0.000	0.000	0.000	0.000
10^thp	0.015	0.000	0.000	0.243	0.170	0.655	0.128	0.398	0.028	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	5.509	5.810	16.646	11.711	12.107	12.646	11.359	13.891	12.635	0.205	0.385	0.263	1.157	1.586	0.000	0.000	0.000	0.000
Stdev	3.180	2.827	8.446	5.301	5.271	5.174	4.781	5.828	5.630	0.432	1.936	1.307	3.849	2.558	0.000	0.000	0.000	0.000
Prev(%)	91.605	88.780	87.901	96.030	94.885	98.512	94.081	96.837	92.944	42.529	38.535	29.630	46.207	50.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.618	2.089	1.302	1.590	3.445	6.215	1.902	3.211	1.951	0.014
10^thp	0.005	0.021	0.003	0.010	0.076	0.143	0.038	0.078	0.018	0.000
90^thp	7.056	6.635	3.830	3.820	7.756	19.399	4.373	7.399	6.138	0.073
Stdev	4.931	2.946	2.200	2.210	6.796	8.293	3.040	5.161	2.833	0.033
Prev(%)	94.595	97.059	100.000	100.000	96.429	98.000	100.000	100.000	100.000	25.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.462	2.453	4.758	0.715	1.959	5.920	6.582	2.586	4.190	2.901	0.161	0.005	0.018	3.930	0.155	0.202	0.196	0.011
10^thp	0.278	0.085	0.026	0.000	0.050	5.920	0.975	0.000	0.122	0.025	0.000	0.000	0.000	3.930	0.000	0.000	0.000	0.000
90^thp	5.058	5.890	13.899	2.398	5.385	5.920	11.383	7.180	9.910	8.935	0.039	0.014	0.009	3.930	0.000	0.000	0.003	0.000
Stdev	1.978	2.485	6.836	1.120	2.535	0.000	4.628	3.124	4.493	4.140	0.731	0.013	0.056	0.000	0.513	0.756	1.440	0.071
Prev(%)	95.833	94.949	91.667	70.588	93.085	100.000	100.000	81.250	96.000	93.427	11.712	12.500	12.500	100.000	9.091	7.143	10.101	7.455

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