HOMD ::species::Neisseria macacae

Species: Neisseria macacae

Download Options

Full Lineage: Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria macacae

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one fourth to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.615	0.793	0.123	0.291	0.135	0.195	0.045	0.034	0.010	0.001
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.704	2.061	0.204	0.776	0.216	0.354	0.107	0.048	0.027	0.000
Stdev	1.207	1.311	0.364	0.794	0.510	0.421	0.106	0.123	0.022	0.003
Prev	80.519	83.117	54.545	79.221	72.727	72.727	48.052	46.753	40.260	3.896

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one-fourth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.633	1.078	0.115	0.383	0.196	0.422	0.069	0.091	0.025	0.000
10^thp	0.000	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.375	3.057	0.186	1.146	0.399	1.057	0.188	0.117	0.068	0.000
Stdev	1.147	1.515	0.325	0.794	0.557	0.581	0.140	0.309	0.050	0.000
Prev	85.811	93.243	57.432	86.486	81.757	87.162	65.541	66.892	58.784	0.000

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 099 and 682 were assigned half to each taxon.

Reads equally close to HMT 099, 609, 682, and 764 were assigned one fourth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.189	0.064	0.026	0.107	0.123	0.023	0.004	0.010	0.007	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.158	0.226	0.049	0.279	0.269	0.050	0.012	0.021	0.017	0.000
Stdev	1.281	0.139	0.069	0.271	0.363	0.065	0.007	0.031	0.016	0.001
Prev	60.811	61.765	58.140	77.143	78.571	68.000	63.636	54.839	55.000	5.000

Copyright 2007-2021 The Forsyth Institute

Hosted on Amazon AWS EC2