HOMD ::genus::Neisseria

Genus: Neisseria

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria
Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Neisseria

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	6.454	8.037	3.094	4.121	4.969	4.882	7.318	6.444	9.119	0.329	0.262	0.159	0.448	0.633	0.000	0.000	0.000	0.000
10^thp	0.494	1.029	0.013	0.186	0.358	0.456	0.192	0.127	0.088	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	15.079	19.059	9.345	10.540	11.393	11.203	20.833	19.318	24.319	0.554	0.271	0.240	1.337	1.271	0.000	0.000	0.000	0.000
Stdev	7.482	8.566	5.192	4.430	6.048	5.454	11.399	8.978	9.763	1.940	1.740	0.693	0.929	1.769	0.000	0.000	0.000	0.000
Prev(%)	98.675	99.338	90.210	95.890	97.987	98.462	97.619	97.333	98.710	65.000	50.862	40.227	58.046	57.143	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.228	1.675	3.182	3.459	6.757	5.343	7.819	5.847	10.189	0.191	0.583	0.619	0.713	1.119	0.000	0.000	0.000	0.007
10^thp	0.000	0.031	0.000	0.138	0.358	0.306	0.084	0.107	0.213	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.221	4.595	9.729	8.213	16.020	14.144	20.608	17.245	26.015	0.160	0.195	0.602	1.190	1.564	0.000	0.000	0.000	0.000
Stdev	2.646	2.877	6.148	4.275	7.550	6.193	12.556	7.663	10.950	1.994	4.145	3.373	2.499	4.113	0.000	0.000	0.000	0.051
Prev(%)	87.654	94.634	82.469	95.533	97.187	97.917	93.769	96.350	96.350	31.801	30.892	36.728	48.276	52.667	0.000	0.000	0.000	8.273

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.195	1.592	3.348	3.304	5.677	5.819	4.506	3.694	6.959	0.008
10^thp	0.005	0.027	0.012	0.034	0.342	0.062	0.070	0.067	0.107	0.000
90^thp	5.910	2.835	11.181	7.079	16.024	18.634	11.915	10.020	17.135	0.024
Stdev	4.932	3.652	8.090	5.234	7.677	8.167	6.646	4.848	9.973	0.021
Prev(%)	94.595	100.000	97.674	100.000	100.000	98.000	96.970	96.774	100.000	30.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.663	5.757	1.378	3.077	3.442	5.850	6.124	14.364	7.351	9.039	0.405	0.052	0.145	2.120	0.055	0.214	0.202	0.014
10^thp	0.666	0.625	0.000	0.000	0.130	5.850	1.281	0.000	0.034	0.130	0.000	0.000	0.000	2.120	0.000	0.000	0.000	0.000
90^thp	8.891	12.770	4.277	8.886	8.370	5.850	10.626	33.280	18.506	23.480	0.279	0.201	0.106	2.120	0.000	0.000	0.050	0.000
Stdev	3.341	5.762	3.582	3.746	4.273	0.000	3.961	14.709	12.260	10.725	2.019	0.120	0.572	0.000	0.181	0.802	1.263	0.168
Prev(%)	91.667	98.232	45.833	76.471	94.149	100.000	87.500	81.250	92.000	96.714	22.523	45.833	28.125	100.000	9.091	7.143	14.141	3.455

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.699	6.845	2.145	3.072	4.088	4.726	6.118	6.318	9.894	0.005
10^thp	0.184	0.334	0.000	0.163	0.354	0.521	0.143	0.116	0.074	0.000
90^thp	14.997	16.792	7.296	6.901	8.862	11.534	16.100	15.794	28.296	0.000
Stdev	7.719	7.598	4.674	3.917	4.036	4.920	8.527	8.203	11.373	0.028
Prev(%)	96.104	98.701	83.117	97.403	98.701	98.701	94.805	96.104	98.701	9.091

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.303	6.941	2.078	3.500	5.582	6.295	5.499	5.301	10.354	0.001
10^thp	0.280	0.741	0.000	0.332	0.489	0.675	0.118	0.143	0.250	0.000
90^thp	10.600	16.448	6.556	7.923	13.992	14.277	14.025	15.508	27.151	0.000
Stdev	5.565	6.700	4.470	3.920	6.032	6.190	7.166	6.217	11.381	0.003
Prev(%)	96.622	99.324	85.135	99.324	99.324	98.649	97.297	95.946	98.649	2.797

[Species:Neisseria bacilliformis]	[Species:Neisseria cinerea]	[Species:Neisseria elongata]	[Species:Neisseria flava]	[Species:Neisseria flavescens]
[Species:Neisseria gonorrhoeae]	[Species:Neisseria lactamica]	[Species:Neisseria macacae]	[Species:Neisseria meningitidis]	[Species:Neisseria mucosa]
[Species:Neisseria oralis]	[Species:Neisseria perflava]	[Species:Neisseria polysaccharea]	[Species:Neisseria sicca]	[Species:Neisseria sp. HMT-018]
[Species:Neisseria sp. HMT-020]	[Species:Neisseria sp. HMT-499]	[Species:Neisseria sp. HMT-523]	[Species:Neisseria subflava]	[Species:Neisseria weaveri]

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