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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Staphylococcus lugdunensis (HMT-128)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus lugdunensis
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.1880.0340.0200.0700.0100.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0860.0000.0000.0210.0000.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0001.0410.2820.1040.4310.0770.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.00015.6677.4719.63211.4945.9910.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.


Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.178
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.233
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0000.540
Prev(%)0.0000.0000.0002.8570.0000.0000.0003.2260.00015.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0360.0000.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.2860.0000.0020.0000.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0003.6040.0003.1250.0000.0000.0000.0000.000

Eren V1-V3 www.pnas.org
No Notes

Eren V3-V5 www.pnas.org
No Notes