HOMD Banner
Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Family: Staphylococcaceae
Download Options
Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae

Lower rank member(s): [Genus:Jeotgalicoccus] [Genus:Staphylococcus]
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0060.0000.0210.0360.2960.0530.0130.00016.08020.74620.50512.38912.4410.0940.1530.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0002.7001.4791.5360.2950.3250.0000.0000.0000.000
90thp0.0000.0090.0000.0000.0390.0820.0640.0190.00035.02052.76353.96739.67143.2110.2740.1180.0000.000
Stdev0.0000.0310.0000.2500.1552.5520.3280.0590.00014.79220.71021.25119.27821.2100.1650.6380.0000.000
Prev(%)0.00014.5700.0001.37028.18833.84627.67925.3330.00099.33399.13899.71796.55296.31366.19759.4590.0000.000

HMP 16S RefSeq (V3-V5) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0003.1613.7412.6420.3370.4620.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0750.0230.0150.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0006.34010.6334.9930.3171.2750.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0006.9798.3376.7971.4371.3410.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.00096.93594.90491.66753.10360.6670.0000.0000.0000.000

Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0030.0020.0010.0040.0020.0010.0010.2270.00115.560
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0002.050
90thp0.0030.0030.0040.0110.0070.0040.0040.0200.00431.736
Stdev0.0110.0060.0020.0070.0040.0040.0031.2450.00423.176
Prev(%)18.91914.70620.93037.14328.57120.00021.21241.93512.500100.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0220.0000.0000.0290.0000.0078.19410.5487.8743.1100.0120.0000.0100.123
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0001.1860.5513.1100.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.00021.62723.10116.7933.1100.0200.0000.0000.271
Stdev0.0000.0010.0000.0000.3780.0000.0000.1150.0020.10112.65010.9977.5200.0000.0330.0000.0880.455
Prev(%)0.0000.2530.0000.0002.1280.0000.0006.2504.0001.40886.486100.000100.000100.00018.1820.0003.53518.182

Eren V1-V3 www.pnas.org
No Notes

Eren V3-V5 www.pnas.org
No Notes