HOMD ::family::Staphylococcaceae

Family: Staphylococcaceae

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae
Lower rank member(s): [Genus:Jeotgalicoccus] [Genus:Staphylococcus]

LINKS: Ecology Home | Life Page: Staphylococcaceae

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.006	0.000	0.021	0.036	0.296	0.053	0.013	0.000	16.080	20.746	20.505	12.389	12.441	0.094	0.153	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	2.700	1.479	1.536	0.295	0.325	0.000	0.000	0.000	0.000
90^thp	0.000	0.009	0.000	0.000	0.039	0.082	0.064	0.019	0.000	35.020	52.763	53.967	39.671	43.211	0.274	0.118	0.000	0.000
Stdev	0.000	0.031	0.000	0.250	0.155	2.552	0.328	0.059	0.000	14.792	20.710	21.251	19.278	21.210	0.165	0.638	0.000	0.000
Prev(%)	0.000	14.570	0.000	1.370	28.188	33.846	27.679	25.333	0.000	99.333	99.138	99.717	96.552	96.313	66.197	59.459	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	3.161	3.741	2.642	0.337	0.462	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.075	0.023	0.015	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	6.340	10.633	4.993	0.317	1.275	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	6.979	8.337	6.797	1.437	1.341	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	96.935	94.904	91.667	53.103	60.667	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.003	0.002	0.001	0.004	0.002	0.001	0.001	0.227	0.001	15.560
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	2.050
90^thp	0.003	0.003	0.004	0.011	0.007	0.004	0.004	0.020	0.004	31.736
Stdev	0.011	0.006	0.002	0.007	0.004	0.004	0.003	1.245	0.004	23.176
Prev(%)	18.919	14.706	20.930	37.143	28.571	20.000	21.212	41.935	12.500	100.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.000	0.022	0.000	0.000	0.029	0.000	0.007	8.194	10.548	7.874	3.110	0.012	0.000	0.010	0.123
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	1.186	0.551	3.110	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	21.627	23.101	16.793	3.110	0.020	0.000	0.000	0.271
Stdev	0.000	0.001	0.000	0.000	0.378	0.000	0.000	0.115	0.002	0.101	12.650	10.997	7.520	0.000	0.033	0.000	0.088	0.455
Prev(%)	0.000	0.253	0.000	0.000	2.128	0.000	0.000	6.250	4.000	1.408	86.486	100.000	100.000	100.000	18.182	0.000	3.535	18.182

Eren V1-V3 www.pnas.org

No Notes

Eren V3-V5 www.pnas.org

No Notes

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