HOMD ::species::Prevotella veroralis

Species: Prevotella veroralis (HMT-572)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella veroralis

LINKS: Ecology Home | HMT-572: Body Sites Data | HMT-572: Taxon Description | Life Page: Prevotella veroralis

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.049	0.030	0.000	0.012	0.000	0.000	0.009	0.081	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.098	0.043	0.000	0.052	0.000	0.000	0.018	0.083	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.187	0.162	0.000	0.032	0.000	0.000	0.037	0.431	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	31.788	21.854	0.000	22.603	0.000	0.000	12.798	24.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 298 and 572 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.800	0.080	0.020	0.057	0.070	0.157	0.212	0.253	0.198	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.012	0.002	0.002	0.000
90^thp	1.174	0.163	0.063	0.161	0.198	0.417	0.519	0.474	0.562	0.000
Stdev	2.751	0.221	0.041	0.094	0.083	0.199	0.220	0.482	0.242	0.000
Prev(%)	63.514	58.824	55.814	77.143	82.143	86.000	96.970	93.548	90.000	0.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.092	0.019	0.212	0.000	0.010	0.000	0.010	0.000	0.561	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.307	0.045	0.509	0.000	0.000	0.000	0.036	0.000	0.150	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.257	0.077	0.634	0.000	0.079	0.000	0.019	0.000	2.569	0.004	0.000	0.000	0.000	0.000	0.000	0.000	0.031	0.000
Prev(%)	29.167	21.717	20.833	0.000	6.915	0.000	25.000	0.000	16.000	2.817	0.000	0.000	0.000	0.000	0.000	0.000	0.505	0.000

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to P. histicola, P. veroralis, and P. sp. HMT 313 were assigned one third to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.045	0.054	0.014	0.112	0.353	0.536	0.722	0.630	0.594	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.223	0.125	0.015	0.239	0.792	1.529	1.736	1.782	2.104	0.000
Stdev	0.098	0.151	0.057	0.367	0.908	1.076	1.273	1.097	1.127	0.001
Prev(%)	37.662	28.571	23.377	55.844	77.922	75.325	81.818	85.714	72.727	2.597

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to P. veroralis and P. sp. HMT 313 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.198	0.086	0.022	0.146	0.485	0.675	0.913	0.596	0.436	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.021	0.000	0.000	0.000	0.000
90^thp	0.324	0.142	0.056	0.376	1.113	1.726	2.364	1.521	1.061	0.000
Stdev	0.815	0.328	0.066	0.269	0.746	0.839	1.202	0.905	0.717	0.002
Prev(%)	39.189	32.432	33.108	73.649	85.811	91.892	87.162	85.135	87.162	0.699

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