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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.01   |  Genomic RefSeq: V11.01
Species: Acinetobacter johnsonii (HMT-297)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter johnsonii
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Neither HMT-297 nor HMT-824 were present singularly so these reads were split evenly at these sites (ANA,LRC,RRC).

Reads equidistant to HMT-297 and HMT-824 were assigned to each taxon in proportion to the abundance of HMT-297 and HMT-824 individually at this body site (LAF).

Because HMT-824 is not present individually, all equidistant reads were assigned to HMT-297 at this body site (RAF).



SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0020.0040.0010.0670.0790.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.1720.0990.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0150.0340.0140.2270.3870.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.0004.3336.0344.24933.33328.5710.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Because HMT-824 is not present individually, all equidistant reads were assigned to HMT-297 at this body site (LAF).

SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.3670.6010.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.8440.3500.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0001.1655.7860.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.00048.96640.6670.0000.0000.0000.000

Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.001
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0000.004
Prev(%)1.3510.0000.0000.0000.0000.0000.0000.0000.0005.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0340.0000.0000.0000.0000.0000.0000.0000.0000.0000.0010.1400.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.1400.0000.0000.0000.000
90thp0.0000.0000.0270.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.1400.0000.0000.0000.000
Stdev0.0000.0000.1300.0000.0000.0000.0000.0000.0000.0000.0020.0000.0040.0000.0000.0000.0000.000
Prev(%)0.0000.00016.6670.0000.0000.0000.0000.0000.0000.0000.4500.0003.125100.0000.0000.0000.0000.000

Eren V1-V3 www.pnas.org
No Notes

Eren V3-V5 www.pnas.org
No Notes