HOMD ::Genus:Schaalia

Genus: Schaalia

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Schaalia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.360	0.178	0.183	0.675	2.931	2.048	5.082	4.078	7.651	0.005
10^thp	0.000	0.000	0.000	0.017	0.451	0.453	0.721	0.370	1.311	0.000
90^thp	0.674	0.531	0.586	1.635	5.994	4.749	10.854	9.284	16.720	0.014
Stdev	0.897	0.316	0.387	1.061	2.755	2.169	4.500	3.790	6.223	0.016
Prev(%)	77.922	74.026	62.338	93.506	98.701	96.104	100.000	98.701	100.000	14.286

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.233	0.108	0.129	0.517	2.136	1.346	2.755	2.313	4.074	0.002
10^thp	0.000	0.000	0.000	0.000	0.480	0.266	0.512	0.264	0.662	0.000
90^thp	0.422	0.275	0.422	1.453	4.991	3.213	5.919	5.189	10.254	0.000
Stdev	0.873	0.217	0.357	0.700	1.825	1.504	2.413	2.467	3.685	0.009
Prev(%)	70.946	69.595	39.865	89.189	99.324	100.000	97.973	97.973	99.324	5.594

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.363	0.161	0.232	0.744	3.175	2.033	4.650	4.180	7.699	0.065	0.000	0.000	0.000	0.051	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.020	0.491	0.282	0.893	0.358	1.693	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.631	0.404	0.648	2.058	6.537	4.611	9.963	8.963	13.735	0.158	0.000	0.000	0.000	0.045	0.000	0.000	0.000	0.000
Stdev	0.807	0.215	0.482	1.058	2.695	2.163	3.970	3.553	5.227	0.200	0.000	0.000	0.000	0.225	0.000	0.000	0.000	0.000
Prev(%)	84.106	88.079	79.720	92.466	97.315	96.923	98.810	95.333	98.710	44.333	0.000	0.000	0.000	16.590	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.359	0.218	0.352	1.202	5.278	2.207	5.788	3.999	7.790	0.132	0.241	0.200	0.671	0.674	0.000	0.000	0.000	0.017
10^thp	0.016	0.008	0.000	0.057	1.171	0.380	1.139	0.481	1.611	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.679	0.488	0.998	2.738	10.744	4.484	13.391	8.635	15.713	0.299	0.456	0.375	1.433	1.883	0.000	0.000	0.000	0.010
Stdev	1.053	0.531	0.650	1.617	4.323	2.444	5.022	3.862	6.023	0.373	0.907	1.025	1.773	1.491	0.000	0.000	0.000	0.186
Prev(%)	91.358	90.244	71.852	94.293	99.233	99.107	99.688	98.540	100.000	49.042	42.675	39.815	64.828	66.667	0.000	0.000	0.000	11.436

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.238	0.252	2.051	0.333	1.028	2.112	1.954	2.044	2.926	0.003
10^thp	0.020	0.029	0.002	0.025	0.199	0.360	0.374	0.288	0.027	0.000
90^thp	0.389	0.612	9.497	0.695	2.526	5.267	3.547	4.034	5.850	0.007
Stdev	0.562	0.233	4.761	0.402	0.895	1.864	1.599	1.863	2.560	0.010
Prev(%)	100.000	97.059	90.698	100.000	100.000	98.000	100.000	100.000	97.500	15.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.180	0.045	0.138	0.023	0.039	0.000	0.036	0.039	0.036	0.195	0.001	0.000	0.000	1.230	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	1.230	0.000	0.000	0.000	0.000
90^thp	0.488	0.140	0.264	0.040	0.110	0.000	0.100	0.080	0.144	0.480	0.000	0.000	0.000	1.230	0.000	0.000	0.000	0.000
Stdev	0.200	0.081	0.169	0.065	0.135	0.000	0.083	0.119	0.080	0.650	0.016	0.000	0.000	0.000	0.000	0.000	0.001	0.002
Prev(%)	75.000	54.040	70.833	29.412	20.745	0.000	37.500	18.750	28.000	30.282	0.450	0.000	0.000	100.000	0.000	0.000	0.505	0.727

[Species:Schaalia cardiffensis]	[Species:Schaalia dentiphila]	[Species:Schaalia georgiae]	[Species:Schaalia hongkongensis]	[Species:Schaalia lingnae]
[Species:Schaalia meyeri]	[Species:Schaalia odontolytica]	[Species:Schaalia sp. HMT-172]	[Species:Schaalia sp. HMT-180]	[Species:Schaalia sp. HMT-240]
[Species:Schaalia sp. HMT-404]

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