HOMD ::Family:Actinomycetaceae

Family: Actinomycetaceae

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Genus:Actinomyces] [Genus:Arcanobacterium] [Genus:Mobiluncus] [Genus:Peptidiphaga] [Genus:Schaalia]

LINKS: Ecology Home | Life Page: Actinomycetaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	10.784	11.680	0.886	2.752	4.225	3.047	7.371	5.630	10.190	0.006
10^thp	1.630	1.359	0.000	0.122	0.719	0.638	0.984	0.642	1.580	0.000
90^thp	23.986	25.667	2.875	7.053	9.338	6.781	17.128	12.008	21.001	0.025
Stdev	10.904	10.508	1.509	3.510	4.190	2.934	6.498	5.343	8.738	0.017
Prev(%)	98.701	98.701	85.714	97.403	98.701	96.104	100.000	98.701	100.000	18.182

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.048	4.256	0.355	1.312	2.783	1.729	3.613	3.021	5.121	0.002
10^thp	0.393	0.741	0.000	0.070	0.614	0.383	0.677	0.359	0.898	0.000
90^thp	11.310	9.029	0.998	3.435	6.453	4.016	7.330	7.092	12.698	0.000
Stdev	5.687	5.019	0.961	1.888	2.624	1.847	3.169	3.255	4.832	0.010
Prev(%)	100.000	100.000	64.189	95.270	100.000	100.000	99.324	99.324	100.000	8.392

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	10.438	10.887	1.467	3.188	4.506	2.799	6.637	5.679	9.826	0.182	0.135	0.103	0.418	0.489	0.110	0.069	0.149	0.000
10^thp	1.801	2.288	0.019	0.193	0.857	0.519	1.356	0.629	2.354	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	21.329	23.374	4.563	7.788	9.490	7.122	14.435	13.357	18.437	0.444	0.218	0.174	1.309	1.411	0.011	0.000	0.000	0.000
Stdev	9.547	8.807	2.303	3.904	4.248	2.865	5.502	4.964	7.181	0.380	0.657	0.384	0.922	1.055	0.871	0.569	1.290	0.000
Prev(%)	96.026	96.689	94.406	95.890	97.315	96.923	99.405	95.333	98.710	66.333	47.989	36.261	54.598	60.369	14.085	9.459	7.895	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.563	10.974	2.566	4.660	7.523	3.360	8.356	5.863	10.299	0.342	0.550	0.513	1.383	1.379	0.000	0.000	0.000	0.017
10^thp	1.449	2.058	0.000	0.525	1.802	0.737	1.531	0.744	1.954	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	21.066	24.417	6.283	11.044	14.615	6.846	18.602	12.653	21.523	0.839	1.166	1.161	2.973	3.606	0.000	0.000	0.000	0.010
Stdev	9.015	8.795	5.694	4.985	6.088	3.517	6.948	5.574	7.882	0.832	1.769	2.202	2.634	3.139	0.000	0.000	0.000	0.186
Prev(%)	99.753	99.024	87.407	99.007	99.233	99.702	99.688	98.783	100.000	69.349	61.465	59.568	83.448	82.000	0.000	0.000	0.000	11.436

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	6.430	8.397	2.692	1.171	1.876	2.795	2.924	2.837	3.745	0.010
10^thp	0.472	1.000	0.034	0.160	0.316	0.500	0.549	0.398	0.035	0.000
90^thp	16.072	24.784	9.555	3.103	4.083	6.770	6.049	5.583	7.130	0.044
Stdev	8.194	10.375	4.770	1.171	1.281	2.586	2.329	2.608	3.440	0.025
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	20.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	10.899	14.998	14.110	2.527	4.760	0.540	2.879	3.928	5.913	12.098	0.428	0.125	0.155	4.990	0.080	0.992	0.162	0.033
10^thp	1.281	3.395	3.668	0.000	0.330	0.540	0.363	0.115	0.954	2.995	0.000	0.000	0.000	4.990	0.000	0.000	0.000	0.000
90^thp	19.454	30.125	30.263	5.770	11.385	0.540	7.081	7.485	12.706	24.135	0.490	0.224	0.069	4.990	0.380	0.395	0.100	0.000
Stdev	9.109	11.040	11.589	4.206	6.195	0.000	4.459	3.094	7.513	9.017	2.003	0.329	0.776	0.000	0.180	3.540	1.107	0.516
Prev(%)	95.833	99.747	100.000	82.353	98.404	100.000	100.000	87.500	100.000	99.531	24.324	50.000	34.375	100.000	18.182	21.429	17.172	4.000

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