HOMD ::Genus:Riemerella

Genus: Riemerella

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Riemerella Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Species:Riemerella sp. HMT-322]

LINKS: Ecology Home | Life Page: Riemerella

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.147	1.612	0.748	0.344	0.206	0.322	0.251	0.329	0.265	0.000
10^thp	0.105	0.171	0.011	0.043	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.407	3.416	1.938	0.827	0.421	0.609	0.580	0.926	0.640	0.000
Stdev	1.068	1.407	0.886	0.369	0.199	0.513	0.369	0.402	0.408	0.001
Prev(%)	100.000	98.701	89.610	96.104	88.312	80.519	79.221	79.221	79.221	1.299

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.435	0.621	0.252	0.176	0.104	0.196	0.102	0.145	0.111	0.000
10^thp	0.006	0.059	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.098	1.247	0.583	0.436	0.246	0.429	0.277	0.332	0.298	0.000
Stdev	0.469	0.615	0.356	0.192	0.120	0.184	0.163	0.236	0.232	0.000
Prev(%)	89.865	94.595	72.973	89.189	77.703	87.162	69.595	75.000	61.486	0.000

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.206	1.473	0.804	0.385	0.187	0.336	0.179	0.302	0.200	0.000	0.023	0.011	0.000	0.045	0.000	0.000	0.000	0.000
10^thp	0.104	0.273	0.028	0.012	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.791	2.980	2.029	0.920	0.475	0.851	0.456	0.715	0.492	0.000	0.010	0.000	0.000	0.034	0.000	0.000	0.000	0.000
Stdev	1.827	1.232	0.851	0.399	0.201	0.436	0.302	0.499	0.310	0.000	0.198	0.080	0.000	0.208	0.000	0.000	0.000	0.000
Prev(%)	98.675	100.000	93.706	89.726	82.550	81.538	76.190	88.000	84.516	0.000	12.356	9.348	0.000	11.521	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.033	1.481	1.179	0.654	0.323	0.393	0.265	0.312	0.244	0.000	0.068	0.086	0.123	0.000	0.000	0.000	0.000	0.000
10^thp	0.102	0.299	0.049	0.119	0.000	0.032	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.471	3.237	2.819	1.397	0.748	0.863	0.672	0.722	0.591	0.000	0.041	0.043	0.486	0.000	0.000	0.000	0.000	0.000
Stdev	1.106	1.283	1.962	0.617	0.336	0.365	0.450	0.392	0.313	0.000	0.403	0.498	0.336	0.000	0.000	0.000	0.000	0.000
Prev(%)	97.778	99.756	93.333	96.526	82.097	91.369	76.324	89.294	84.672	0.000	15.287	14.815	25.517	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.134	0.150	0.040	0.053	0.044	0.033	0.025	0.016	0.022	0.000
10^thp	0.000	0.007	0.001	0.003	0.002	0.004	0.000	0.000	0.000	0.000
90^thp	0.282	0.450	0.086	0.107	0.099	0.086	0.037	0.029	0.055	0.000
Stdev	0.453	0.166	0.080	0.077	0.047	0.039	0.076	0.019	0.025	0.000
Prev(%)	86.486	97.059	90.698	94.286	89.286	92.000	75.758	83.871	77.500	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

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