HOMD ::species::Rothia aeria

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Rothia aeria

Download Options

Full Lineage: Bacteria; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Rothia; Rothia aeria

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to R. aeria and R. dentocariosa were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	3.671	4.889	0.131	0.794	0.194	0.415	0.140	0.061	0.018	0.001
10^thp	0.299	0.556	0.000	0.049	0.012	0.000	0.000	0.000	0.000	0.000
90^thp	8.169	11.719	0.285	1.789	0.528	1.089	0.125	0.126	0.049	0.000
Stdev	4.098	4.665	0.362	1.965	0.374	0.621	0.835	0.172	0.034	0.003
Prev	96.104	97.403	63.636	97.403	93.506	88.312	59.740	59.740	49.351	5.195

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	1.351	1.948	0.021	0.167	0.116	0.250	0.023	0.057	0.014	0.000
10^thp	0.027	0.173	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.214	4.549	0.040	0.441	0.226	0.709	0.072	0.101	0.047	0.000
Stdev	2.470	3.270	0.072	0.251	0.511	0.469	0.039	0.242	0.035	0.002
Prev	92.568	95.270	25.676	79.054	62.162	74.324	39.865	41.892	28.378	1.399

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 188 and 587 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	2.243	2.009	0.186	1.054	0.251	0.165	0.038	0.030	0.023	0.003
10^thp	0.040	0.095	0.003	0.079	0.024	0.012	0.003	0.000	0.000	0.000
90^thp	7.194	2.963	0.164	3.260	0.709	0.360	0.091	0.136	0.033	0.013
Stdev	3.594	5.228	0.604	1.676	0.253	0.285	0.054	0.061	0.067	0.007
Prev	100.000	100.000	95.349	100.000	96.429	100.000	96.970	80.645	72.500	20.000