HOMD ::species::Capnocytophaga sp._HMT_903

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Capnocytophaga sp._HMT_903

Download Options

Full Lineage: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga sp._HMT_903

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equallly close to C. sp. HMT 324 and C. sp. HMT 903 were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.048	0.014	0.000	0.003	0.001	0.006	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.104	0.035	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.218	0.046	0.002	0.025	0.004	0.045	0.003	0.002	0.000	0.000
Prev	15.584	16.883	2.597	2.597	2.597	3.896	1.299	1.299	0.000	0.000

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to C. ochraceae, C. sp. HMT 412, and C. sp. HMT 903 were assigned one-third to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.082	0.110	0.001	0.003	0.001	0.010	0.001	0.003	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.206	0.319	0.000	0.009	0.000	0.030	0.000	0.000	0.000	0.000
Stdev	0.231	0.257	0.010	0.011	0.004	0.025	0.005	0.033	0.002	0.000
Prev	45.946	48.649	3.378	12.162	8.784	32.432	6.757	6.757	4.730	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.002	0.011	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.006	0.027	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.004	0.025	0.001	0.000	0.001	0.000	0.000	0.000	0.000	0.000
Prev	25.676	47.059	2.326	0.000	7.143	0.000	3.030	0.000	0.000	0.000