HOMD ::genus::Capnocytophaga

Genus: Capnocytophaga

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga
Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Capnocytophaga

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.004	9.202	0.810	1.000	0.277	1.430	0.994	1.581	0.612	0.012	0.089	0.062	0.094	0.154	0.000	0.000	0.000	0.000
10^thp	1.456	2.068	0.000	0.074	0.000	0.058	0.000	0.022	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	15.029	15.857	2.433	2.215	0.716	3.389	2.961	5.188	2.388	0.029	0.063	0.031	0.165	0.172	0.000	0.000	0.000	0.000
Stdev	5.360	6.099	1.715	1.751	0.373	1.462	2.103	2.554	1.190	0.049	0.683	0.481	0.339	0.907	0.000	0.000	0.000	0.000
Prev(%)	99.338	100.000	83.217	95.205	85.906	92.308	81.250	95.333	82.581	17.667	26.437	17.280	28.161	18.433	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	7.621	9.442	1.098	1.605	0.496	1.743	1.388	1.817	0.677	0.000	0.285	0.177	0.720	0.469	0.000	0.000	0.000	0.000
10^thp	1.239	2.415	0.000	0.110	0.000	0.284	0.000	0.020	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	14.494	17.068	2.957	3.447	1.214	3.836	3.747	5.002	2.048	0.000	0.224	0.096	1.317	0.757	0.000	0.000	0.000	0.000
Stdev	5.732	5.780	2.415	2.761	0.786	2.103	2.836	3.172	1.269	0.000	1.264	1.200	2.657	1.859	0.000	0.000	0.000	0.000
Prev(%)	99.753	100.000	77.778	94.789	83.887	97.917	86.604	92.214	87.591	0.000	29.299	20.988	42.759	36.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.417	8.110	0.478	0.377	0.897	0.401	0.486	0.224	0.462	0.003
10^thp	0.116	0.683	0.007	0.006	0.009	0.010	0.004	0.003	0.004	0.000
90^thp	11.908	16.454	1.095	0.845	1.411	0.973	1.562	0.707	0.706	0.000
Stdev	5.764	6.214	0.975	0.551	2.784	0.629	1.029	0.401	1.330	0.013
Prev(%)	100.000	100.000	100.000	94.286	96.429	96.000	90.909	93.548	92.500	5.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	6.998	7.432	2.092	0.281	0.967	0.100	0.934	3.587	2.551	0.745	0.104	0.010	0.017	0.710	0.000	0.607	0.032	0.004
10^thp	2.678	1.785	0.080	0.000	0.000	0.100	0.344	0.000	0.000	0.000	0.000	0.000	0.000	0.710	0.000	0.000	0.000	0.000
90^thp	12.474	13.570	3.972	0.856	2.210	0.100	1.769	9.840	5.898	2.440	0.000	0.000	0.000	0.710	0.000	0.000	0.000	0.000
Stdev	3.891	4.916	2.206	0.376	2.166	0.000	0.611	6.689	6.722	1.580	1.402	0.047	0.066	0.000	0.000	2.272	0.266	0.076
Prev(%)	100.000	99.747	95.833	70.588	81.383	100.000	100.000	75.000	80.000	79.577	5.405	4.167	9.375	100.000	0.000	7.143	4.545	0.909

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	9.253	9.829	0.534	1.385	0.300	1.472	1.150	1.723	0.575	0.002
10^thp	1.124	1.354	0.000	0.023	0.000	0.140	0.000	0.019	0.000	0.000
90^thp	18.480	17.705	1.480	2.580	0.810	3.016	3.267	4.597	1.375	0.000
Stdev	7.248	6.686	1.294	2.968	0.491	1.582	2.509	3.023	1.229	0.008
Prev(%)	98.701	97.403	67.532	90.909	88.312	92.208	87.013	90.909	81.818	6.494

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	6.819	8.703	0.239	0.729	0.311	1.501	0.898	1.405	0.531	0.001
10^thp	1.148	2.278	0.000	0.064	0.030	0.353	0.000	0.015	0.000	0.000
90^thp	13.300	15.636	0.478	1.783	0.700	3.263	2.206	4.464	1.333	0.000
Stdev	5.011	4.887	0.796	1.241	0.515	1.197	2.173	2.522	1.147	0.007
Prev(%)	99.324	99.324	52.703	95.270	93.243	99.324	85.811	90.541	83.108	2.098

[Species:Capnocytophaga bilenii]	[Species:Capnocytophaga endodontalis]	[Species:Capnocytophaga gingivalis]	[Species:Capnocytophaga granulosa]	[Species:Capnocytophaga haemolytica]
[Species:Capnocytophaga leadbetteri]	[Species:Capnocytophaga ochracea]	[Species:Capnocytophaga sp. HMT-338]	[Species:Capnocytophaga sp. HMT-863]	[Species:Capnocytophaga sp. HMT-878]
[Species:Capnocytophaga sp. HMT-901]	[Species:Capnocytophaga sputigena]

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