HOMD ::subspecies::clade

Subspecies: clade_411

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Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasanguinis; clade_411

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. parasanguinis clade 411, S. peroris, and S. sp. HMT 057 were assigned one third to each taxon

reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.036	0.032	0.091	0.449	1.625	1.051	1.889	1.696	3.515	0.011
10^thp	0.000	0.000	0.000	0.000	0.060	0.000	0.033	0.032	0.192	0.000
90^thp	0.044	0.075	0.178	1.264	4.137	2.483	5.198	4.663	8.461	0.033
Stdev	0.142	0.084	0.290	0.908	2.109	1.769	2.015	2.027	3.776	0.037
Prev	40.260	44.156	51.948	81.818	96.104	83.117	89.610	94.805	96.104	15.584

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.049	0.073	0.032	0.163	0.495	0.311	0.476	0.419	0.849	0.001
10^thp	0.000	0.000	0.000	0.015	0.094	0.057	0.107	0.077	0.184	0.000
90^thp	0.119	0.159	0.099	0.416	1.050	0.667	1.016	0.936	1.746	0.003
Stdev	0.089	0.112	0.071	0.203	0.445	0.326	0.395	0.384	0.737	0.004
Prev	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 411 and 721 were assigned half to each taxon.

Reads equally close to HMT 057 and 411 were assigned half to each taxon.

Reads equally close to HMT 066 and 411 were assigned half to each taxon.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	0.101	0.251	0.540	1.062	2.532	3.912	4.576	4.902	6.124	0.005
10^thp	0.000	0.003	0.005	0.040	0.436	0.239	0.391	0.082	0.043	0.000
90^thp	0.203	0.484	1.419	2.889	5.073	9.015	9.001	14.449	16.544	0.001
Stdev	0.242	0.730	1.150	1.694	2.443	4.354	4.924	6.375	6.939	0.019
Prev	94.286	94.118	94.444	100.000	100.000	100.000	100.000	96.774	100.000	10.000

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