HOMD ::species::Treponema socranskii

Species: Treponema socranskii

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema socranskii
Lower rank member(s): [Subspecies:subsp. buccale] [Subspecies:subsp. paredis] [Subspecies:subsp. socranskii]

LINKS: Ecology Home | Life Page: Treponema socranskii

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

HMP 16S RefSeq (V3-V5) (not published)

No Notes

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.300	0.161	0.006	0.016	0.004	0.004	0.006	0.026	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.888	0.385	0.012	0.021	0.008	0.010	0.016	0.082	0.004	0.000
Stdev	0.615	0.456	0.020	0.043	0.010	0.005	0.021	0.056	0.004	0.000
Prev(%)	72.973	67.647	23.256	51.429	28.571	50.000	39.394	48.387	15.000	0.000

HMP Metaphlan (not published)

** View Notes (mouse over) **

Notes:
has subspecies

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.492	0.098	0.217	0.000	0.002	0.000	0.000	0.000	0.031	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.010	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.683	0.345	0.510	0.000	0.000	0.000	0.000	0.000	0.032	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.045	0.246	0.224	0.000	0.022	0.000	0.000	0.000	0.102	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	79.167	44.192	91.667	0.000	2.128	0.000	0.000	0.000	16.000	0.939	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.409	0.168	0.000	0.011	0.006	0.025	0.037	0.071	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.413	0.403	0.000	0.020	0.000	0.071	0.065	0.243	0.010	0.000
Stdev	0.708	0.471	0.000	0.038	0.025	0.053	0.123	0.163	0.010	0.003
Prev(%)	57.143	44.156	0.000	12.987	9.091	35.065	25.974	42.857	11.688	1.299

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.297	0.129	0.000	0.009	0.003	0.027	0.010	0.027	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.848	0.392	0.000	0.016	0.006	0.073	0.023	0.069	0.010	0.000
Stdev	0.401	0.293	0.002	0.056	0.016	0.044	0.033	0.065	0.010	0.000
Prev(%)	73.649	62.838	3.378	25.676	10.811	56.081	30.405	45.946	18.919	0.000

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