HOMD ::species::Treponema amylovorum

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema amylovorum

Download Options

Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema amylovorum

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)	No Notes

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. amylovorum and T. sp. HMT 257 were assigned half to each taxon.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.066	0.021	0.000	0.006	0.004	0.052	0.010	0.030	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.158	0.027	0.000	0.019	0.000	0.111	0.019	0.039	0.000	0.000
Stdev	0.247	0.086	0.001	0.019	0.015	0.181	0.049	0.106	0.018	0.000
Prev	27.703	14.189	0.676	13.514	8.784	30.405	17.568	20.270	3.378	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.014	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.007	0.000	0.000	0.000	0.001	0.000	0.000	0.072	0.000	0.000
Prev	8.571	2.941	0.000	2.941	3.571	0.000	6.061	6.452	0.000	0.000