Species: Streptococcus australis (HMT-073)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.688 | 0.756 | 4.764 | 4.649 | 3.280 | 0.789 | 1.410 | 1.603 | 0.601 | 0.003 |
| 10thp | 0.121 | 0.200 | 2.595 | 2.124 | 1.203 | 0.174 | 0.164 | 0.208 | 0.131 | 0.000 |
| 90thp | 1.481 | 1.612 | 6.873 | 7.260 | 5.880 | 1.447 | 3.628 | 4.429 | 1.309 | 0.009 |
| Stdev | 0.934 | 0.566 | 1.800 | 1.915 | 1.770 | 0.579 | 1.512 | 1.784 | 0.487 | 0.004 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.403 | 100.000 | 100.000 | 100.000 | 49.351 |
Eren V3-V5 www.pnas.org
(data from healthy subjects)
Notes:
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.049 | 0.073 | 0.032 | 0.163 | 0.495 | 0.311 | 0.476 | 0.419 | 0.849 | 0.001 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.015 | 0.094 | 0.057 | 0.107 | 0.077 | 0.184 | 0.000 |
| 90thp | 0.119 | 0.159 | 0.099 | 0.416 | 1.050 | 0.667 | 1.016 | 0.936 | 1.746 | 0.003 |
| Stdev | 0.089 | 0.112 | 0.071 | 0.203 | 0.445 | 0.326 | 0.395 | 0.384 | 0.737 | 0.004 |
| Prev(%) | 79.054 | 86.486 | 56.081 | 99.324 | 100.000 | 100.000 | 99.324 | 97.973 | 100.000 | 16.084 |
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
Notes:
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-073 because they are too close to differentiate at these sites (AKE,THR).
Reads equidistant to HMT-073 and HMT-398 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-398 individually at these sites (ANA,BMU,PTO).
Reads equidistant to HMT-061 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-061 and HMT-073 individually at this body site (HPA).
Reads equidistant to HMT-066 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-066 and HMT-073 individually at these sites (LAF,LRC,RAF,RRC,SAL,TDO).
Reads equidistant to HMT-073 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-638 individually at this body site (THR).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-073 because they are too close to differentiate at these sites (AKE,THR).
Reads equidistant to HMT-073 and HMT-398 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-398 individually at these sites (ANA,BMU,PTO).
Reads equidistant to HMT-061 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-061 and HMT-073 individually at this body site (HPA).
Reads equidistant to HMT-066 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-066 and HMT-073 individually at these sites (LAF,LRC,RAF,RRC,SAL,TDO).
Reads equidistant to HMT-073 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-638 individually at this body site (THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.034 | 0.044 | 0.186 | 1.222 | 1.516 | 0.911 | 0.959 | 1.017 | 1.856 | 0.056 | 0.037 | 0.024 | 0.145 | 0.191 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.039 | 0.132 | 0.000 | 0.064 | 0.080 | 0.135 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.082 | 0.130 | 0.397 | 2.969 | 3.740 | 2.153 | 2.518 | 2.501 | 4.925 | 0.141 | 0.035 | 0.036 | 0.378 | 0.508 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.088 | 0.085 | 0.460 | 2.786 | 1.679 | 1.309 | 1.279 | 1.323 | 2.388 | 0.175 | 0.195 | 0.144 | 0.402 | 0.599 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 55.629 | 64.238 | 85.315 | 95.890 | 100.000 | 88.462 | 96.726 | 98.000 | 98.710 | 37.667 | 24.713 | 20.113 | 39.080 | 34.101 | 0.000 | 0.000 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
Notes:
Reads equally close to HMT 073, 578, and 638 were assigned one-third to each taxon.
Reads equally close to HMT 073 and 431 were assigned half to each taxon.
Reads equally close to HMT 073 and 638 were assigned half to each taxon.
Reads equally close to HMT 073, 578, and 638 were assigned one-third to each taxon.
Reads equally close to HMT 073 and 431 were assigned half to each taxon.
Reads equally close to HMT 073 and 638 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.132 | 0.218 | 1.789 | 1.728 | 2.379 | 5.274 | 2.163 | 1.685 | 3.340 | 0.040 |
| 10thp | 0.010 | 0.014 | 0.048 | 0.341 | 0.487 | 0.421 | 0.186 | 0.271 | 0.259 | 0.000 |
| 90thp | 0.268 | 0.551 | 6.869 | 3.469 | 6.289 | 10.817 | 4.724 | 4.313 | 9.048 | 0.141 |
| Stdev | 0.285 | 0.345 | 2.978 | 1.320 | 2.552 | 6.363 | 2.505 | 1.533 | 4.162 | 0.095 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 50.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.012 | 0.013 | 0.002 | 0.006 | 0.689 | 0.060 | 0.182 | 0.089 | 0.105 | 0.195 | 0.002 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.060 | 0.021 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.034 | 0.030 | 0.000 | 0.004 | 0.715 | 0.060 | 0.313 | 0.330 | 0.246 | 0.480 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.032 | 0.061 | 0.010 | 0.022 | 2.825 | 0.000 | 0.145 | 0.196 | 0.225 | 0.481 | 0.017 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 | 0.016 | 0.007 |
| Prev(%) | 25.000 | 19.949 | 4.167 | 11.765 | 56.915 | 100.000 | 87.500 | 31.250 | 44.000 | 75.352 | 1.802 | 8.333 | 0.000 | 0.000 | 0.000 | 0.000 | 1.515 | 0.727 |
