HOMD ::Species:Leptotrichia hofstadii

Species: Leptotrichia hofstadii (HMT-224)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia hofstadii Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-224: Body Sites Data | HMT-224: Taxon Description | Life Page: Leptotrichia hofstadii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.035	0.090	0.003	0.029	0.003	0.007	0.002	0.003	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.096	0.247	0.000	0.013	0.009	0.017	0.002	0.010	0.000	0.000
Stdev	0.089	0.237	0.019	0.204	0.011	0.021	0.008	0.008	0.005	0.000
Prev(%)	29.870	40.260	6.494	19.481	14.286	18.182	10.390	15.584	9.091	0.000

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.203	0.414	0.014	0.031	0.010	0.031	0.009	0.014	0.008	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.563	1.352	0.010	0.078	0.036	0.093	0.029	0.044	0.020	0.000
Stdev	0.423	0.666	0.087	0.075	0.022	0.050	0.020	0.032	0.027	0.000
Prev(%)	68.243	72.297	11.486	48.649	28.378	48.649	28.378	34.459	25.676	0.000

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-224 and HMT-225 were assigned to each taxon in proportion to the abundance of HMT-224 and HMT-225 individually at these sites (SUBP, SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.169	0.394	0.029	0.099	0.000	0.000	0.014	0.000	0.000	0.000	0.004	0.005	0.015	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.567	1.234	0.037	0.165	0.000	0.000	0.031	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.388	0.916	0.161	0.558	0.000	0.000	0.063	0.000	0.000	0.000	0.025	0.060	0.098	0.000	0.000	0.000	0.000	0.000
Prev(%)	50.993	58.940	20.280	42.466	0.000	0.000	18.155	0.000	0.000	0.000	4.023	2.833	4.023	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.291	0.546	0.053	0.123	0.018	0.070	0.000	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.829	1.700	0.039	0.283	0.050	0.218	0.000	0.066	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.711	1.124	0.370	0.522	0.057	0.146	0.000	0.107	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	54.815	63.415	14.568	40.943	21.228	52.976	0.000	29.684	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.378	1.200	0.036	0.127	0.081	0.009	0.015	0.007	0.005	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.717	3.431	0.109	0.371	0.144	0.021	0.025	0.020	0.021	0.000
Stdev	1.246	2.528	0.091	0.247	0.233	0.013	0.034	0.011	0.009	0.000
Prev(%)	71.622	82.353	58.140	68.571	75.000	64.000	63.636	48.387	40.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.114	0.218	0.035	0.013	0.053	0.000	0.014	0.000	0.005	0.002	0.000	0.000	0.000	0.000	0.000	0.323	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.319	0.630	0.120	0.016	0.030	0.000	0.038	0.000	0.012	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.249	0.462	0.092	0.044	0.501	0.000	0.028	0.000	0.015	0.006	0.000	0.000	0.000	0.000	0.000	1.208	0.000	0.000
Prev(%)	45.833	54.040	20.833	11.765	13.032	0.000	37.500	0.000	12.000	7.981	0.000	0.000	0.000	0.000	0.000	7.143	0.000	0.000

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