HOMD ::species::Haemophilus parainfluenzae

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Taxonomy: V4.0 | 16S rRNA RefSeq: V16.02 | Genomic RefSeq: V11.01

Species: Haemophilus parainfluenzae (HMT-718)

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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parainfluenzae

LINKS: Ecology Home | HMT-718: Body Sites Data | HMT-718: Taxon Description | Life Page: Haemophilus parainfluenzae

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.757	1.307	3.422	2.482	1.510	2.053	1.004	1.158	1.854	0.049	0.022	0.023	0.048	0.255	0.000	0.000	0.000	0.000
10^thp	0.000	0.011	0.035	0.080	0.074	0.022	0.046	0.021	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.727	2.545	11.482	5.424	3.741	5.361	2.776	3.214	5.164	0.119	0.040	0.023	0.161	0.243	0.000	0.000	0.000	0.000
Stdev	1.653	3.894	5.508	3.477	1.982	3.716	1.318	1.915	3.554	0.226	0.092	0.160	0.126	1.691	0.000	0.000	0.000	0.000
Prev(%)	86.755	91.391	95.105	97.260	95.973	90.769	96.429	93.333	96.129	43.000	26.437	21.530	40.805	39.631	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	4.882	8.312	22.770	24.011	14.958	12.132	7.782	9.034	13.825	0.583	1.246	1.580	2.524	3.078	0.000	0.000	0.000	0.099
10^thp	0.213	0.476	1.429	5.025	4.785	3.042	0.746	0.939	1.282	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	13.094	19.286	53.884	50.488	27.782	23.697	19.641	20.705	30.123	1.488	0.991	0.896	3.905	6.314	0.000	0.000	0.000	0.201
Stdev	6.249	9.626	21.746	18.277	10.114	8.608	8.016	8.709	11.657	1.343	5.364	6.649	8.357	8.670	0.000	0.000	0.000	0.321
Prev(%)	99.012	99.756	99.506	99.752	100.000	99.702	99.377	99.270	100.000	73.180	57.643	53.086	80.690	77.333	0.000	0.000	0.000	45.012

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.541	2.071	8.065	7.770	5.472	4.261	2.592	2.022	5.255	0.008
10^thp	0.011	0.034	0.301	1.114	0.910	0.184	0.188	0.082	0.249	0.000
90^thp	2.789	7.192	22.305	17.425	11.614	10.271	6.146	5.809	15.824	0.020
Stdev	3.882	3.399	9.590	9.062	4.944	4.138	4.481	2.378	6.601	0.025
Prev(%)	93.243	100.000	100.000	100.000	100.000	98.000	100.000	100.000	100.000	15.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.563	3.202	0.077	9.249	10.011	2.920	5.130	1.444	3.537	5.172	0.185	0.046	0.017	0.000	0.034	0.142	0.086	0.038
10^thp	0.230	0.160	0.000	0.574	1.415	2.920	2.551	0.000	0.232	0.490	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.828	7.825	0.057	22.492	24.885	2.920	10.893	3.355	7.766	12.125	0.378	0.092	0.030	0.000	0.000	0.497	0.040	0.061
Stdev	5.847	4.417	0.255	9.147	10.743	0.000	3.757	1.540	4.414	5.227	0.639	0.116	0.057	0.000	0.112	0.351	0.629	0.308
Prev(%)	100.000	99.242	37.500	94.118	98.936	100.000	100.000	81.250	100.000	99.296	25.676	41.667	21.875	0.000	9.091	21.429	14.141	24.909

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.075	2.131	3.460	2.470	1.725	2.471	1.328	1.583	2.579	0.011
10^thp	0.000	0.000	0.045	0.078	0.210	0.158	0.018	0.033	0.022	0.000
90^thp	2.715	3.974	8.655	5.541	4.199	8.019	3.594	3.609	7.580	0.050
Stdev	2.169	5.739	5.286	3.908	2.750	3.665	1.887	2.841	4.528	0.032
Prev(%)	80.519	88.312	94.805	96.104	98.701	94.805	92.208	92.208	93.506	18.182

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.991	4.928	8.735	7.645	6.607	8.113	4.128	5.777	9.385	0.054
10^thp	0.149	0.347	0.327	1.511	1.601	2.706	0.556	0.657	1.236	0.000
90^thp	6.275	12.425	21.478	18.411	12.343	15.372	8.407	12.537	20.655	0.154
Stdev	4.070	5.677	8.574	7.628	5.330	5.425	3.459	5.274	7.137	0.200
Prev(%)	97.297	99.324	100.000	100.000	100.000	100.000	100.000	100.000	100.000	30.070