Species: Aggregatibacter segnis (HMT-762)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.050 | 0.041 | 0.023 | 0.000 | 0.000 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.148 | 0.114 | 0.020 | 0.000 | 0.000 | 0.089 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.118 | 0.110 | 0.117 | 0.000 | 0.000 | 0.120 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 45.695 | 31.126 | 20.280 | 0.000 | 0.000 | 29.231 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Neither HMT-512 nor HMT-762 were present singularly so these reads were split evenly at these sites (AKE,HPA,LRC,PTO,TDO).Because HMT-512 is not present individually, all equidistant reads were assigned to HMT-762 at these sites (BMU,SAL,SUBP,SUPP,THR).
Neither HMT-512 nor HMT-762 were present singularly so these reads were split evenly at these sites (AKE,HPA,LRC,PTO,TDO).Because HMT-512 is not present individually, all equidistant reads were assigned to HMT-762 at these sites (BMU,SAL,SUBP,SUPP,THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.488 | 0.409 | 0.053 | 0.238 | 0.038 | 0.319 | 0.293 | 0.091 | 0.014 | 0.000 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.247 | 1.203 | 0.082 | 0.590 | 0.102 | 0.918 | 0.250 | 0.122 | 0.035 | 0.000 | 0.013 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.076 | 0.883 | 0.192 | 0.847 | 0.102 | 0.573 | 2.675 | 0.417 | 0.040 | 0.000 | 0.353 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 75.309 | 69.024 | 30.617 | 54.094 | 41.432 | 68.155 | 42.991 | 51.095 | 33.090 | 0.000 | 15.924 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.021 | 0.064 | 0.014 | 0.018 | 0.023 | 0.011 | 0.004 | 0.005 | 0.003 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.016 | 0.037 | 0.011 | 0.033 | 0.014 | 0.045 | 0.003 | 0.012 | 0.000 | 0.000 |
| Stdev | 0.079 | 0.324 | 0.066 | 0.058 | 0.108 | 0.031 | 0.022 | 0.012 | 0.014 | 0.000 |
| Prev(%) | 25.676 | 47.059 | 37.209 | 48.571 | 28.571 | 36.000 | 15.152 | 22.581 | 5.000 | 0.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.149 | 0.340 | 0.274 | 0.504 | 0.031 | 0.000 | 0.066 | 0.037 | 0.018 | 0.016 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.422 | 1.000 | 0.859 | 1.828 | 0.090 | 0.000 | 0.234 | 0.135 | 0.040 | 0.030 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.317 | 0.727 | 0.737 | 1.215 | 0.099 | 0.000 | 0.116 | 0.099 | 0.062 | 0.107 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 50.000 | 54.545 | 20.833 | 35.294 | 23.404 | 0.000 | 37.500 | 18.750 | 16.000 | 22.535 | 0.450 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Eren V1-V3 www.pnas.org
No Notes
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to A. segnis, A. sp. HMT 512, and A. sp. HMT 513 were assigned one-third to each taxon.
Reads equally close to A. segnis, A. sp. HMT 512, and A. sp. HMT 513 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.134 | 0.150 | 0.004 | 0.018 | 0.014 | 0.056 | 0.014 | 0.040 | 0.008 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.343 | 0.332 | 0.005 | 0.038 | 0.028 | 0.203 | 0.028 | 0.038 | 0.012 | 0.000 |
| Stdev | 0.368 | 0.413 | 0.021 | 0.083 | 0.047 | 0.117 | 0.051 | 0.269 | 0.047 | 0.000 |
| Prev(%) | 42.568 | 50.000 | 10.811 | 31.081 | 31.081 | 49.324 | 29.054 | 30.405 | 20.946 | 0.000 |
