HOMD ::order::Burkholderiales

Order: Burkholderiales

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales
Lower rank member(s): [Family:Alcaligenaceae] [Family:Burkholderiaceae] [Family:Comamonadaceae]
Genera:

LINKS: Ecology Home | Life Page: Burkholderiales

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.998	3.598	0.342	0.939	0.323	1.891	0.316	0.093	0.023	3.131	0.413	0.643	3.189	2.552	0.349	0.133	0.009	0.000
10^thp	0.044	0.054	0.000	0.000	0.000	0.042	0.000	0.000	0.000	0.000	0.000	0.000	0.030	0.000	0.000	0.000	0.000	0.000
90^thp	8.032	9.020	0.437	1.916	0.753	4.228	0.754	0.265	0.068	10.361	0.573	0.908	6.463	4.701	0.082	0.136	0.012	0.000
Stdev	4.008	4.988	1.492	1.895	0.624	4.304	0.972	0.195	0.054	7.181	1.592	2.688	6.711	6.840	2.294	0.661	0.046	0.000
Prev(%)	92.715	93.377	74.825	89.041	80.537	93.077	75.000	60.667	43.226	83.667	68.678	77.054	93.678	85.714	36.620	31.081	11.842	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.268	4.460	0.533	1.435	0.611	1.690	0.559	0.203	0.055	0.187	0.580	0.880	3.664	2.541	0.259	0.468	0.004	0.013
10^thp	0.060	0.122	0.000	0.000	0.000	0.031	0.000	0.000	0.000	0.000	0.000	0.000	0.005	0.000	0.000	0.000	0.000	0.000
90^thp	8.278	10.452	0.958	3.275	1.574	4.722	1.059	0.484	0.131	0.386	0.928	1.081	4.448	5.325	0.454	0.166	0.000	0.000
Stdev	4.633	6.104	2.796	3.215	1.475	2.780	1.899	0.575	0.172	1.044	2.685	4.227	11.083	7.611	1.247	3.505	0.026	0.176
Prev(%)	95.802	97.561	58.765	84.615	80.818	91.667	68.536	63.504	46.229	50.575	71.338	58.642	89.655	86.000	31.034	25.683	6.806	1.217

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.009	1.431	0.082	0.344	0.136	0.056	0.017	0.164	0.081	0.000
10^thp	0.000	0.007	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.570	2.543	0.129	1.090	0.266	0.095	0.034	0.048	0.064	0.000
Stdev	2.304	3.754	0.282	0.789	0.241	0.142	0.025	0.795	0.341	0.002
Prev(%)	85.135	88.235	69.767	85.714	85.714	82.000	75.758	67.742	45.000	5.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.701	3.366	1.645	0.096	0.890	0.060	1.629	0.003	0.002	0.046	0.054	0.015	0.029	0.480	0.006	0.041	0.019	0.016
10^thp	0.086	0.060	0.000	0.000	0.000	0.060	0.091	0.000	0.000	0.000	0.000	0.000	0.000	0.480	0.000	0.000	0.000	0.000
90^thp	4.459	8.400	4.798	0.380	2.015	0.060	3.787	0.000	0.012	0.080	0.009	0.048	0.030	0.480	0.030	0.154	0.000	0.000
Stdev	1.954	5.077	4.152	0.195	2.868	0.000	3.955	0.013	0.007	0.230	0.259	0.039	0.106	0.000	0.014	0.066	0.114	0.151
Prev(%)	95.833	95.202	58.333	47.059	72.606	100.000	87.500	6.250	12.000	39.437	10.360	25.000	21.875	100.000	18.182	42.857	9.596	2.727

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.174	4.920	0.071	0.859	0.328	1.813	0.328	0.153	0.038	0.001
10^thp	0.030	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	12.968	13.562	0.216	1.875	0.878	5.155	0.502	0.563	0.127	0.000
Stdev	5.923	6.043	0.107	2.043	0.650	3.563	1.323	0.348	0.087	0.004
Prev(%)	92.208	90.909	59.740	85.714	77.922	83.117	59.740	53.247	42.857	2.597

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.221	3.215	0.064	0.633	0.327	1.289	0.331	0.155	0.061	0.001
10^thp	0.000	0.063	0.000	0.000	0.000	0.029	0.000	0.000	0.000	0.000
90^thp	6.060	6.825	0.123	1.277	0.843	3.238	0.485	0.473	0.130	0.000
Stdev	3.559	4.592	0.283	1.352	0.626	1.695	1.308	0.365	0.163	0.006
Prev(%)	88.514	95.270	35.135	85.135	82.432	91.216	65.541	60.135	45.946	1.399

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