HOMD ::genus::Granulicatella

Genus: Granulicatella

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella
Lower rank member(s): [Species:Granulicatella adiacens] [Species:Granulicatella elegans]

LINKS: Ecology Home | Life Page: Granulicatella

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.470	0.517	2.370	1.830	2.579	1.604	1.652	1.630	2.703	0.172	0.088	0.066	0.377	0.356	0.000	0.000	0.000	0.000
10^thp	0.052	0.056	0.061	0.228	0.831	0.167	0.233	0.190	0.483	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.061	1.257	5.800	3.899	4.718	3.531	3.387	3.542	5.420	0.343	0.192	0.100	0.913	0.972	0.000	0.000	0.000	0.000
Stdev	0.518	0.492	2.900	1.616	1.630	1.699	1.804	1.607	2.262	0.607	0.365	0.354	0.847	0.737	0.000	0.000	0.000	0.000
Prev(%)	96.026	98.013	97.902	97.260	100.000	91.538	97.917	99.333	100.000	56.000	42.816	37.110	55.172	50.230	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.532	0.635	3.965	2.880	4.721	1.717	2.151	1.901	3.494	0.207	0.339	0.329	0.451	0.540	0.000	0.000	0.000	0.000
10^thp	0.050	0.094	0.191	0.458	1.365	0.373	0.175	0.207	0.580	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.189	1.418	8.739	6.298	8.333	3.515	4.636	3.908	7.504	0.479	0.560	0.557	1.109	1.901	0.000	0.000	0.000	0.000
Stdev	0.659	0.676	5.323	2.752	3.877	1.564	2.213	1.990	3.463	0.577	1.819	1.397	1.217	0.986	0.000	0.000	0.000	0.000
Prev(%)	95.802	98.537	94.321	97.519	99.488	99.405	97.819	99.757	99.513	56.705	44.586	47.531	56.552	58.667	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.835	1.078	2.552	1.064	1.740	2.553	1.408	2.145	1.920	0.018
10^thp	0.044	0.139	0.153	0.232	0.707	0.607	0.251	0.135	0.254	0.000
90^thp	2.203	2.721	6.177	1.949	2.767	5.120	3.287	3.370	4.159	0.043
Stdev	0.924	1.458	3.738	0.726	0.843	2.015	1.399	3.721	1.602	0.047
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	20.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.342	0.378	0.378	2.149	1.531	2.550	1.050	0.739	0.912	1.962	0.038	0.016	0.007	0.410	0.003	0.018	0.010	0.015
10^thp	0.006	0.050	0.000	0.188	0.080	2.550	0.587	0.020	0.144	0.475	0.000	0.000	0.000	0.410	0.000	0.000	0.000	0.000
90^thp	0.995	0.810	0.947	3.650	3.995	2.550	1.678	1.620	2.228	3.875	0.000	0.007	0.009	0.410	0.000	0.021	0.000	0.000
Stdev	0.419	0.380	0.751	1.498	1.810	0.000	0.519	0.853	0.811	2.021	0.270	0.066	0.034	0.000	0.009	0.059	0.099	0.260
Prev(%)	87.500	97.475	79.167	94.118	93.883	100.000	100.000	93.750	92.000	99.531	4.505	12.500	12.500	100.000	9.091	14.286	2.525	2.727

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.646	0.624	3.371	1.718	2.688	1.539	1.772	1.578	2.808	0.003
10^thp	0.103	0.050	0.017	0.166	0.844	0.269	0.413	0.278	0.765	0.000
90^thp	1.301	1.517	9.982	4.198	5.511	3.248	3.640	2.988	5.358	0.000
Stdev	0.809	0.614	4.204	1.842	1.780	1.252	1.345	1.209	1.886	0.013
Prev(%)	92.208	98.701	94.805	100.000	100.000	93.506	98.701	100.000	100.000	6.494

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.533	0.677	2.427	1.627	2.740	1.606	1.742	1.562	3.138	0.003
10^thp	0.037	0.124	0.056	0.281	0.945	0.420	0.374	0.280	0.784	0.000
90^thp	1.091	1.252	6.559	3.768	4.769	3.334	3.259	3.159	6.518	0.000
Stdev	0.671	0.774	2.905	1.861	1.677	1.263	1.214	1.230	2.360	0.019
Prev(%)	92.568	98.649	95.270	99.324	99.324	99.324	100.000	98.649	100.000	7.692

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