HOMD ::Genus:Fusobacterium

Genus: Fusobacterium

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Fusobacterium

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.135	4.263	2.501	2.451	2.815	3.879	5.455	9.211	5.380	0.142	0.202	0.069	0.435	0.425	0.174	0.121	0.028	0.003
10^thp	1.336	0.324	0.049	0.231	0.289	0.490	0.443	1.544	0.277	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	22.038	11.633	6.673	5.052	6.980	9.818	11.098	18.656	13.127	0.275	0.187	0.095	0.920	0.990	0.030	0.021	0.000	0.000
Stdev	7.649	4.345	3.833	2.861	2.741	3.488	6.082	7.142	5.327	0.669	1.256	0.387	1.791	1.299	0.830	0.703	0.212	0.035
Prev(%)	99.338	99.338	97.203	98.630	97.987	96.923	97.619	100.000	99.355	51.667	37.644	34.844	46.552	45.622	18.310	10.811	7.895	1.307

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	13.065	6.350	3.798	4.527	5.308	6.503	8.024	12.793	8.122	0.241	0.864	0.687	1.844	2.028	0.092	0.000	0.000	0.029
10^thp	2.771	0.668	0.141	0.633	0.810	1.304	1.277	4.024	0.738	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	24.982	14.730	10.030	10.030	10.865	14.395	16.689	24.241	17.986	0.603	1.108	1.542	4.565	5.194	0.035	0.000	0.000	0.019
Stdev	9.029	5.673	4.928	4.263	4.324	5.258	6.815	8.229	6.858	0.665	3.072	2.033	3.779	5.138	0.456	0.000	0.000	0.306
Prev(%)	100.000	99.756	96.543	99.256	99.488	100.000	98.754	100.000	99.513	65.900	57.962	55.247	71.724	71.333	27.586	0.000	0.000	15.815

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	13.996	9.013	1.902	2.514	2.266	3.210	3.767	5.379	2.914	0.007
10^thp	0.460	0.643	0.037	0.044	0.254	0.182	0.375	0.292	0.031	0.000
90^thp	33.986	22.568	5.686	6.054	5.283	9.704	8.617	12.709	6.484	0.030
Stdev	13.582	10.012	2.988	3.057	2.307	4.461	4.566	6.139	3.507	0.019
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	20.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	5.767	1.622	3.064	1.841	1.420	1.780	2.038	7.083	6.442	3.942	0.096	0.009	0.003	0.000	0.044	0.095	0.039	0.009
10^thp	0.982	0.160	0.633	0.024	0.070	1.780	0.687	1.745	1.304	0.250	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	11.318	3.680	5.777	4.412	3.855	1.780	3.043	13.920	14.676	9.375	0.000	0.000	0.000	0.000	0.070	0.021	0.000	0.000
Stdev	5.388	1.898	3.059	2.970	1.706	0.000	1.036	4.876	4.933	4.003	0.669	0.045	0.012	0.000	0.123	0.347	0.416	0.074
Prev(%)	100.000	99.495	100.000	88.235	94.947	100.000	100.000	93.750	100.000	98.592	4.955	4.167	6.250	0.000	18.182	14.286	6.061	5.091

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.081	2.669	1.744	1.095	1.216	2.134	2.879	5.495	2.940	0.002
10^thp	0.543	0.094	0.000	0.088	0.136	0.319	0.287	0.733	0.130	0.000
90^thp	16.619	8.119	4.988	2.307	2.533	4.523	5.422	13.312	7.553	0.000
Stdev	8.758	3.160	3.971	1.288	1.194	1.676	4.231	6.722	2.859	0.007
Prev(%)	98.701	100.000	87.013	97.403	96.104	98.701	100.000	100.000	98.701	6.494

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	14.944	8.326	2.182	2.994	3.379	6.830	6.059	10.717	8.418	0.001
10^thp	3.246	0.959	0.053	0.363	0.382	1.412	0.674	2.215	0.483	0.000
90^thp	26.419	16.418	6.321	5.878	7.431	13.429	13.893	19.828	18.808	0.000
Stdev	8.993	6.251	3.304	3.115	3.023	4.687	5.520	7.730	7.635	0.006
Prev(%)	100.000	100.000	96.622	100.000	99.324	100.000	100.000	99.324	100.000	5.594

[Species:Fusobacterium animalis]	[Species:Fusobacterium gonidiaformans]	[Species:Fusobacterium hwasookii]	[Species:Fusobacterium naviforme]	[Species:Fusobacterium necrophorum]
[Species:Fusobacterium nucleatum_sensu_stricto]	[Species:Fusobacterium periodonticum]	[Species:Fusobacterium polymorphum]	[Species:Fusobacterium pseudoperiodonticum]	[Species:Fusobacterium simiae]
[Species:Fusobacterium sp. HMT-203]	[Species:Fusobacterium sp. HMT-204]	[Species:Fusobacterium sp. HMT-205]	[Species:Fusobacterium sp. HMT-248]	[Species:Fusobacterium sp. HMT-370]
[Species:Fusobacterium vincentii]	[Species:Fusobacterium watanabei]

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