HOMD ::subspecies::clade

Subspecies: clade_431

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Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus infantis; clade_431

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.688	0.756	4.764	4.649	3.280	0.789	1.410	1.603	0.601	0.003
10^thp	0.121	0.200	2.595	2.124	1.203	0.174	0.164	0.208	0.131	0.000
90^thp	1.481	1.612	6.873	7.260	5.880	1.447	3.628	4.429	1.309	0.009
Stdev	0.934	0.566	1.800	1.915	1.770	0.579	1.512	1.784	0.487	0.004
Prev	100.000	100.000	100.000	100.000	100.000	97.403	100.000	100.000	100.000	49.351

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.467	0.670	2.381	2.608	1.036	0.299	0.638	0.617	0.104	0.000
10^thp	0.076	0.170	0.634	0.767	0.249	0.084	0.046	0.044	0.012	0.000
90^thp	0.960	1.337	4.596	4.710	2.263	0.565	1.589	1.597	0.214	0.001
Stdev	0.412	0.500	1.657	1.496	0.882	0.249	0.938	0.841	0.131	0.002
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	97.973	11.888

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 073 and 431 were assigned half to each taxon.

Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.388	0.354	3.424	3.840	3.603	2.488	2.186	2.252	1.522	0.025
10^thp	0.013	0.024	0.638	1.068	0.580	0.421	0.279	0.337	0.191	0.000
90^thp	0.986	0.764	7.526	8.324	8.364	4.304	5.131	3.759	3.693	0.046
Stdev	0.776	0.591	3.320	2.944	3.246	1.807	1.883	2.450	1.423	0.067
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	45.000

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