HOMD ::species::Treponema sp._HMT_230

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema sp._HMT_230

Download Options

Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema sp._HMT_230

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.037	0.005	0.000	0.001	0.000	0.003	0.000	0.009	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.031	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.185	0.043	0.000	0.005	0.000	0.016	0.004	0.050	0.003	0.000
Prev	14.286	3.896	0.000	1.299	0.000	7.792	1.299	7.792	2.597	0.000

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. medium and T. sp. HMT 226, 230, 235, and 237 were assigned one-fifth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.122	0.037	0.001	0.005	0.002	0.016	0.007	0.027	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.374	0.064	0.000	0.016	0.006	0.044	0.013	0.070	0.000	0.000
Stdev	0.307	0.117	0.004	0.017	0.006	0.032	0.024	0.082	0.005	0.000
Prev	50.676	35.135	3.378	22.973	14.865	45.946	27.027	39.189	6.081	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.005	0.001	0.000	0.001	0.000	0.000	0.000	0.018	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.007	0.003	0.000	0.000	0.000	0.000	0.000	0.004	0.000	0.000
Stdev	0.027	0.004	0.000	0.003	0.000	0.001	0.000	0.093	0.000	0.000
Prev	21.622	11.765	0.000	5.714	0.000	2.000	3.030	12.903	0.000	0.000