HOMD ::species::Treponema medium

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema medium

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Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema medium

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to T. medium and T. vincentii were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.018	0.010	0.000	0.003	0.007	0.011	0.017	0.017	0.018	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.067	0.006	0.000	0.002	0.019	0.037	0.064	0.056	0.045	0.000
Stdev	0.050	0.045	0.001	0.010	0.018	0.025	0.041	0.044	0.047	0.000
Prev	20.779	10.390	2.597	10.390	22.078	28.571	27.273	25.974	28.571	1.299

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. medium and T. sp. HMT 226, 230, 235, and 237 were assigned one-fifth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.122	0.037	0.001	0.005	0.002	0.016	0.007	0.027	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.374	0.064	0.000	0.016	0.006	0.044	0.013	0.070	0.000	0.000
Stdev	0.307	0.117	0.004	0.017	0.006	0.032	0.024	0.082	0.005	0.000
Prev	50.676	35.135	3.378	22.973	14.865	45.946	27.027	39.189	6.081	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.012	0.002	0.000	0.001	0.000	0.001	0.004	0.019	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.040	0.005	0.000	0.001	0.000	0.003	0.004	0.020	0.001	0.000
Stdev	0.030	0.004	0.001	0.003	0.001	0.002	0.018	0.064	0.001	0.000
Prev	33.784	32.353	4.651	11.429	7.143	20.000	24.242	25.806	12.500	0.000