HOMD ::species::Streptococcus sp._HMT

Species: Streptococcus sp._HMT_074

Download Options

Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sp._HMT_074

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.688	0.756	4.764	4.649	3.280	0.789	1.410	1.603	0.601	0.003
10^thp	0.121	0.200	2.595	2.124	1.203	0.174	0.164	0.208	0.131	0.000
90^thp	1.481	1.612	6.873	7.260	5.880	1.447	3.628	4.429	1.309	0.009
Stdev	0.934	0.566	1.800	1.915	1.770	0.579	1.512	1.784	0.487	0.004
Prev	100.000	100.000	100.000	100.000	100.000	97.403	100.000	100.000	100.000	49.351

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.

Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.

Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.314	0.357	4.401	4.921	5.005	1.103	2.417	2.001	1.292	0.001
10^thp	0.007	0.012	0.132	1.174	0.962	0.299	0.341	0.210	0.380	0.000
90^thp	0.642	0.649	10.327	10.773	10.996	2.091	5.742	4.054	2.606	0.003
Stdev	0.678	0.984	4.519	3.796	4.093	0.778	2.651	2.395	0.942	0.005
Prev	92.568	93.243	99.324	100.000	100.000	100.000	100.000	100.000	100.000	12.587

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 066 and 074 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.033	0.074	0.130	0.391	0.448	0.669	0.660	0.730	0.524	0.000
10^thp	0.001	0.004	0.005	0.021	0.056	0.068	0.048	0.070	0.026	0.000
90^thp	0.090	0.142	0.241	0.775	0.914	1.535	1.978	1.292	1.116	0.000
Stdev	0.059	0.142	0.250	0.686	0.394	0.701	0.827	1.206	0.717	0.000
Prev	93.243	97.059	97.674	97.143	100.000	100.000	100.000	96.774	100.000	0.000

Copyright 2007-2021 The Forsyth Institute

Hosted on Amazon AWS EC2