HOMD ::species::Streptococcus sp._HMT

Species: Streptococcus sp._HMT_066

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Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sp._HMT_066

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

reads equally close to S. parasanguinis clade 721 and S. sp. HMT 066 were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.692	0.761	4.794	4.756	3.744	1.199	2.005	2.094	1.227	0.006
10^thp	0.121	0.200	2.595	2.174	1.781	0.314	0.483	0.486	0.419	0.000
90^thp	1.484	1.620	6.947	7.289	6.175	2.175	4.336	4.866	2.379	0.012
Stdev	0.937	0.570	1.800	1.866	1.635	0.930	1.568	1.801	0.949	0.015
Prev	100.000	100.000	100.000	100.000	100.000	98.701	100.000	100.000	100.000	51.948

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.049	0.073	0.032	0.163	0.495	0.311	0.476	0.419	0.849	0.001
10^thp	0.000	0.000	0.000	0.015	0.094	0.057	0.107	0.077	0.184	0.000
90^thp	0.119	0.159	0.099	0.416	1.050	0.667	1.016	0.936	1.746	0.003
Stdev	0.089	0.112	0.071	0.203	0.445	0.326	0.395	0.384	0.737	0.004
Prev	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 066 and 707 were assigned half to each taxon.

Reads equally close to HMT 066 and 721 were assigned half to each taxon.

Reads equally close to HMT 066 and 411 were assigned half to each taxon.

Reads equally close to HMT 066 and 074 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.081	0.141	0.631	1.130	1.225	1.828	1.124	1.300	1.372	0.002
10^thp	0.005	0.010	0.013	0.123	0.159	0.322	0.208	0.224	0.230	0.000
90^thp	0.167	0.425	1.819	2.287	2.811	4.089	2.247	3.104	3.261	0.000
Stdev	0.176	0.223	1.090	1.859	1.265	1.833	0.803	1.965	1.215	0.009
Prev	97.297	100.000	100.000	100.000	100.000	100.000	100.000	96.774	100.000	5.000

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