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Link to NCBI Blast+
Blast Formats
Databases
Parameters
Blast Programs
Advanced Parameters
Link to NCBI Blast+
Available HOMD Databases
For RefSeq Blast:
eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 9)
- 1. eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 28)
- 2. eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 9)
- 3. eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 28)
- 4. eHOMD 16s rRNA RefSeq Version 14.51 (starts at 28 trimmed at 1407 of aligned seq)
- 5. eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 9)
- 6. eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 28)
- 7. Greengenes 16S rRNA Sequences (gg16S_unaligned)
- 8. NCBI Reference RNA Sequences (refseq_rna, 1969-12-31)
- 9. RDP 16S rRNA Sequences
- 10. eHOMD 16s rRNA RefSeq Extended V1.1
For Genomes Blast:
1. Genomic DNA from all HOMD Genomes
=> Blast against the whole sequences of genomes annotated automatically by HOMD
2. DNA Sequences of Proteins from all HOMD Genomes
=> Blast against the orfs amino acids of genomes annotated automatically by HOMD
3. "organism": Genomic DNA
=> Blast against the whole sequence of "organism"
4. "organism": DNA of Annotated Proteins
=> Blast against only orfs amino acids of "organism"