HOME
Taxonomy
Taxon Table
Life Pages
Ecology / Abundance
Dynamic Tree
Rank Level and Counts
Preferred Body Sites
Download Taxonomy Data
Dropped Taxa
Taxonomy Version History
Genomes
Genome Table
CRISPR-Cas (V3.1 data)
JBrowse Genome Viewer Tool
Genomic Trees
»
Conserved Protein Tree
Ribosomal Protein Tree
16S rRNA Gene Tree
Genome Explorer and Annotations
BLAST Against All Genomes
BLAST Against A Single Genome
Anvi-server
(
Docker-AWS Host Testing
)
Download Genomic Data
HOMD Reference Genome Version History
Proteomes
View Genomic Tree based on Conserved Proteins
All Protein Sequences Annotated from Genomes
Proteins Detected in Human Saliva
Genomes with Proteins Detected in Human Saliva
16S rRNA Microbiome
RefSeq BLAST Server
View 16S rRNA RefSeq Phylogenetic Tree
Download RefSeq Data
Version History
Animal Microbiomes
Mouse (MOMD)
Downloads
Download Batch HOMD Data
HOMD FTP Site
Resources/Tools
HOMD Site (V3.1)
Posters
Publications
Oralgen
»
Oralgen Genome Info
Site Search
About Us
HOMD Help Content
How to Cite HOMD
Project Description
Strains and DNA Availability
People
Publications
Contact Us
Announcements
Taxonomy:
V4.0
| 16S rRNA RefSeq:
V16.01
| Genomic RefSeq:
V11.01
Genome Table
There are 8488 genomes representing 630 taxa (Including 'Reference' and 'Dropped' Taxa).
Download this Genome Data
:
[Browser]
[Text]
[Excel]
OR
Batch Genomic Data
Genus by Alphabet:
[
All
]
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Reset Filters
Open Advanced Filter
Text Search:
Paging:
On
(500 rows / page)
Off (show all 9 rows)
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Sort Column
:
Genome-ID
Taxon-ID
Species
Strain
MAG
Level
Contigs
Length
GC
Reverse
Submit
Number of Records Found: 9 | Showing: 9 rows
row #
Genome-ID
Taxon-ID
Species Name
Strain
MAG
Assembly Level
Contigs
Combined
Length
GC(%)
Genome Info and Tools
Annotations
1
GCA_030227545.1
HMT-843
Dialister micraerophilus
UMB12087A.2
Contig
104
1,407,888
35.33
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
2
GCA_030228535.1
HMT-843
Dialister micraerophilus
UMB10230B.1
Contig
35
1,226,292
35.28
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
3
GCA_946892155.1
HMT-843
Dialister micraerophilus
SRR12830916_bin.6_metaWRAP_v1.3_MAG
yes
Contig
76
1,242,955
34.99
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
4
GCA_946999455.1
HMT-843
Dialister micraerophilus
SRR16916891_bin.5_metaWRAP_v1.3_MAG
yes
Contig
64
1,264,431
35.13
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
5
GCA_947039085.1
HMT-843
Dialister micraerophilus
ERR4705329_bin.2_metaWRAP_v1.3_MAG
yes
Contig
116
1,157,308
35.28
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
6
GCA_947090205.1
HMT-843
Dialister micraerophilus
SRR10258546_bin.3_metaWRAP_v1.3_MAG
yes
Contig
14
1,234,903
35.25
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
7
GCA_947252495.1
HMT-843
Dialister micraerophilus
SRR17635465_bin.22_metaWRAP_v1.3_MAG
yes
Contig
30
1,195,451
35.06
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
8
GCA_000183445.2
HMT-843
Dialister micraerophilus
UPII 345-E
Contig
32
1,395,825
35.65
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
9
GCA_000194985.1
HMT-843
Dialister micraerophilus
DSM 19965
Scaffold
31
1,281,836
36.61
Taxon Info
Genome Info
Genome Viewer
BLAST
PROKKA
NCBI
Advanced Genome Table Filter
×
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Clear
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Search This Table:
All Fields
Genome-ID
Taxon-ID
Organism
Strain
Clear
Genomes from Taxa of Primary Body Sites:
(See
Preferred Body Sites
Page)
Oral
Nasal
Skin
Gut
Vaginal
Pathogen
Environmental
Reference
Unassigned
Toggle CheckBoxes On/Off
Genomes from Taxa Abundance:
High
Medium
Low
Scarce
Toggle CheckBoxes On/Off
Genomes from Taxa Status:
Named / Cultivated
Named / Uncultivated
Unnamed / Cultivated
Unnamed / Uncultivated
Dropped
Toggle CheckBoxes On/Off
Sort Column:
Genome-ID
Taxon-ID
Species
Strain
Level
Contigs
Length
GC
Reverse
Table Paging:
On
(500 rows / page)
Off
(show all filtered rows in one table)
MAGs:
Show Only MAGs
No MAGs
Default
Apply
Close