HOME
Taxonomy
Taxon Table
Life Pages
Ecology (Abundance)
Dynamic Tree
Rank Level and Counts
Download Taxonomy Data
Taxonomy Version History
Genomes
Genome Table
CRISPR-Cas
JBrowse Genome Viewer Tool
Genomic Trees
»
Conserved Protein Tree
Ribosomal Protein Tree
16S rRNA Gene Tree
Genome Explorer and Annotations
BLAST Against All Genomes
BLAST Against One Genome
Anvi-server
(
BETA
)
Download Genomic Data
HOMD Reference Genome Version History
Proteomes
View Genomic Tree based on Conserved Proteins
All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
RefSeq BLAST Server
Old 16S BLAST
View 16S rRNA RefSeq Phylogenetic Tree
Download RefSeq Data
Version History
Animal Microbiomes
Mouse (MOMD)
Downloads
Download Batch HOMD Data
HOMD FTP Site
Resources
Old HOMD Site (v2)
Posters
Publications
Oralgen
»
www.oralgen.org Archive
Oralgen Genome Info
HOMD FTP Site
HOMD-v2
[Page-Help]
HOMD Help Content
How to Cite HOMD
Project Description
Strains and DNA Availability
People
Publications
Contact Us
Announcements
Search Help
16S rRNA RefSeq:
V15.23
Genomic RefSeq:
V10.1
Genome Table
There are 8622 genomes representing 568 taxa (Including 'NonOralRef' and 'Dropped' Taxa).
Download this Genome Data
:
[Browser]
[Text]
[Excel]
Genus by Alphabet:
[
All
]
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
Reset Filters
Find Genomes by Phylum:
Select a Phylum
Absconditabacteria_(SR1)
Actinobacteria
Bacteroidetes
Chlamydiae
Chlorobi
Chloroflexi
Cyanobacteria
Euryarchaeota
Firmicutes
Fusobacteria
Gracilibacteria_(GN02)
Ignavibacteriae
Lentisphaerae
Proteobacteria
Saccharibacteria_(TM7)
Spirochaetes
Synergistetes
Tenericutes
WPS-2
Clear
Paging:
On
Off
(500 rows / page)
Search This Table:
All Fields
Seq-ID
Taxon-ID
Genus
Species
Strain
Isolation Origin
Sequence Status
Submitter
Clear
Sort Column
:
SEQ-ID
Taxon-ID
Genus/Species
Species
Strain
Contigs
Length
GC
Reverse
Submit
Number of Records Found: 54 Showing: 54
SEQ-ID
TaxID
Genus
Species
Strain/Culture
Contigs
Combined
Length
GC(%)
Genome Info and Tools
Annotations
SEQF1368.1
HMT-817
Lactobacillus
crispatus
JV-V01
86
2,221,719
41.3
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF1930.1
HMT-817
Lactobacillus
crispatus
ST1
1
2,043,161
36.91
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF2084.1
HMT-817
Lactobacillus
crispatus
strain=214-1
187
2,068,805
36.87
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF2420.1
HMT-817
Lactobacillus
crispatus
strain=FB077-07
10
2,699,381
40.79
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF2421.1
HMT-817
Lactobacillus
crispatus
FB049-03
5
2,459,384
39.94
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4675.1
HMT-817
Lactobacillus
crispatus
DC21.1
2
2,039,404
37.0
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4676.1
HMT-817
Lactobacillus
crispatus
ATCC 33820
1
2,239,089
37.0
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4677.1
HMT-817
Lactobacillus
crispatus
CO3MRSI1
1
2,345,902
37.09
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4678.1
HMT-817
Lactobacillus
crispatus
AB70
2
2,367,925
37.26
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4679.1
HMT-817
Lactobacillus
crispatus
Lc116
2
2,447,242
37.16
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4680.1
HMT-817
Lactobacillus
crispatus
C25
2
2,325,084
36.86
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4681.1
HMT-817
Lactobacillus
crispatus
FDAARGOS_743
2
2,386,960
37.12
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4682.1
HMT-817
Lactobacillus
crispatus
B4
1
2,039,590
37.02
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4683.3
HMT-817
Lactobacillus
crispatus
2029
2
2,516,803
37.09
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4684.1
HMT-817
Lactobacillus
crispatus
PRL2021
1
2,411,492
37.31
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4685.1
HMT-817
Lactobacillus
crispatus
lc31
1
2,321,025
37.17
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4686.1
HMT-817
Lactobacillus
crispatus
KT-11
2
2,397,766
36.7
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4687.1
HMT-817
Lactobacillus
crispatus
Lc1700
3
2,818,964
36.86
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4688.1
HMT-817
Lactobacillus
crispatus
Lc1226
1
2,526,154
37.12
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4689.1
HMT-817
Lactobacillus
crispatus
1D
1
2,349,358
36.93
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4690.1
HMT-817
Lactobacillus
crispatus
lc83
1
2,308,435
37.0
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4691.1
HMT-817
Lactobacillus
crispatus
PMC201
4
2,391,600
37.27
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4692.1
HMT-817
Lactobacillus
crispatus
MV-3A-US
76
2,437,083
40.67
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4693.1
HMT-817
Lactobacillus
crispatus
C037
96
2,147,773
36.78
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4694.1
HMT-817
Lactobacillus
crispatus
RL07
387
2,183,841
36.99
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4695.1
HMT-817
Lactobacillus
crispatus
UMB0803
156
2,004,470
37.01
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4696.1
HMT-817
Lactobacillus
crispatus
LB59
189
2,135,344
36.77
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4697.1
HMT-817
Lactobacillus
crispatus
CM_A01_S769-bin_1
148
1,884,423
36.75
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4698.1
HMT-817
Lactobacillus
crispatus
0795_578_1_1_MRS5_S810-bin_1
124
1,841,844
37.01
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4699.1
HMT-817
Lactobacillus
crispatus
EM-LC1
63
1,829,425
37.01
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4700.1
HMT-817
Lactobacillus
crispatus
CM_B09_S834-bin_1
132
1,888,230
36.8
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4701.1
HMT-817
Lactobacillus
crispatus
CM_E08_S829-bin_1
139
2,055,073
36.97
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4702.1
HMT-817
Lactobacillus
crispatus
Mitchell_12_29_17_F06_S622-bin_1
140
1,844,745
36.91
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4703.1
HMT-817
Lactobacillus
crispatus
CM_F04_S798-bin_1
119
1,757,399
37.05
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4704.1
HMT-817
Lactobacillus
crispatus
CM_B01_S770-bin_1
132
1,941,745
37.09
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4705.1
HMT-817
Lactobacillus
crispatus
RL03
330
2,550,531
36.93
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4706.1
HMT-817
Lactobacillus
crispatus
CM2292_MRS1_S784-bin_1
60
1,128,996
36.95
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4707.1
HMT-817
Lactobacillus
crispatus
CM_F06_S814-bin_1
129
1,983,078
36.79
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4708.1
HMT-817
Lactobacillus
crispatus
CM_G02_S783-bin_1
148
1,924,736
37.08
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4709.1
HMT-817
Lactobacillus
crispatus
CM_C05_S803-bin_1
143
1,901,501
36.97
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4710.1
HMT-817
Lactobacillus
crispatus
0421_295_1_2_MRS3_S780-bin_2
79
1,194,450
37.06
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4711.1
HMT-817
Lactobacillus
crispatus
CM_A02_S777-bin_1
113
1,944,386
36.71
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4712.1
HMT-817
Lactobacillus
crispatus
UMNLC1
69
2,188,265
36.92
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4713.1
HMT-817
Lactobacillus
crispatus
CM_H02_S784-bin_1
140
1,842,338
36.99
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4714.1
HMT-817
Lactobacillus
crispatus
0795_578_1_1_MRS1_S862-bin_1
135
1,948,861
36.97
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4715.1
HMT-817
Lactobacillus
crispatus
RL05
431
2,577,199
36.54
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4716.1
HMT-817
Lactobacillus
crispatus
UMNLC14
81
1,988,281
37.0
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4717.1
HMT-817
Lactobacillus
crispatus
M247
297
2,104,098
36.66
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4718.1
HMT-817
Lactobacillus
crispatus
CM_E04_S797-bin_1
138
1,815,935
36.91
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4719.1
HMT-817
Lactobacillus
crispatus
NCK2488
182
2,053,518
36.63
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4720.1
HMT-817
Lactobacillus
crispatus
DZD_CM_30_S798-bin_2
99
1,933,466
36.86
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4721.1
HMT-817
Lactobacillus
crispatus
VMC8
255
2,332,118
36.83
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4722.1
HMT-817
Lactobacillus
crispatus
CM_H09_S840-bin_1
133
1,888,572
36.8
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI
SEQF4723.1
HMT-817
Lactobacillus
crispatus
RL24
319
2,392,313
36.77
Taxon Info
Genome Info
Genome Viewer
PROKKA
NCBI