HOME
Taxonomy
Taxon Table
Life Pages
Ecology / Abundance
Dynamic Tree
Rank Level and Counts
Preferred Body Sites
Download Taxonomy Data
Dropped Taxa
Taxonomy Version History
Genomes
Genome Table
CRISPR-Cas (V3.1 data)
JBrowse Genome Viewer Tool
Genomic Trees
»
Conserved Protein Tree
Ribosomal Protein Tree
16S rRNA Gene Tree
Genome Explorer and Annotations
BLAST Against All Genomes
BLAST Against A Single Genome
Pangenomes
(
Beta
)
Download Genomic Data
HOMD Reference Genome Version History
Proteomes
View Genomic Tree based on Conserved Proteins
All Protein Sequences Annotated from Genomes
Proteins Detected in Human Saliva
Genomes with Proteins Detected in Human Saliva
16S rRNA Microbiome
RefSeq BLAST Server
View 16S rRNA RefSeq Phylogenetic Tree
Download RefSeq Data
Version History
Animal Microbiomes
Mouse (MOMD)
Downloads
Download Batch HOMD Data
HOMD FTP Site
Resources/Tools
HOMD Site (V3.1)
Posters
Publications
Oralgen
»
Oralgen Genome Info
Site Search
About Us
HOMD Help Content
How to Cite HOMD
Project Description
Strains and DNA Availability
People
Publications
Contact Us
Announcements
Site Search
Taxonomy:
V4.0
| 16S rRNA RefSeq:
V16.02
| Genomic RefSeq:
V11.01
Genome Table
There are 8488 genomes representing 630 taxa (Including 'Reference' and 'Dropped' Taxa).
Download this Genome Data
:
[Browser]
[Text]
[Excel]
OR
Batch Genomic Data
Genus by Alphabet:
[
All
]
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Reset Filters
Open Advanced Filter
Text Search:
Paging:
On
(500 rows / page)
Off (show all 24 rows)
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Sort Column
:
Genome-ID
Taxon-ID
Species
Strain
MAG
Level
Contigs
Length
GC
Reverse
Submit
Number of Records Found: 24 | Showing: 24 rows
row #
Genome-ID
Taxon-ID
Species Name
Strain
MAG
Assembly Level
Contigs
Combined
Length
GC(%)
More Information and Tools
Annotations
1
GCA_020736165.1
HMT-700
Capnocytophaga ochracea
FDAARGOS_1550
Complete Genome
1
2,713,235
39.43
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
2
GCA_026013785.1
HMT-700
Capnocytophaga ochracea
KCOM 2191
Complete Genome
1
2,672,569
39.7
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
3
GCA_026013805.1
HMT-700
Capnocytophaga ochracea
KCOM 26681
Complete Genome
1
2,779,391
39.27
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
4
GCA_026013825.1
HMT-700
Capnocytophaga ochracea
KCOM 28121
Complete Genome
1
2,807,434
39.3
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
5
GCA_900446705.1
HMT-700
Capnocytophaga ochracea
NCTC11546
Contig
44
2,946,791
39.27
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
6
GCA_900460915.1
HMT-700
Capnocytophaga ochracea
NCTC11545
Contig
12
2,809,526
39.28
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
7
GCA_900618145.1
HMT-700
Capnocytophaga ochracea
NCTC11458
Contig
2
2,694,690
39.41
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
8
GCA_902482725.1
HMT-700
Capnocytophaga ochracea
MGYG-HGUT-03119
Contig
112
2,451,559
39.65
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
9
GCA_905371985.1
HMT-700
Capnocytophaga ochracea
SRR9217392-mag-bin.8
yes
Contig
149
2,549,426
39.49
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
10
GCA_937926985.1
HMT-700
Capnocytophaga ochracea
ERR589597_bin.12_CONCOCT_v1.1_MAG
yes
Contig
165
2,429,053
39.63
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
11
GCA_000023285.1
HMT-700
Capnocytophaga ochracea
DSM 7271
Complete Genome
1
2,612,925
39.59
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
12
GCA_000183985.1
HMT-700
Capnocytophaga ochracea
F0287
Scaffold
61
2,663,545
40.1
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
13
GCA_000271925.1
HMT-700
Capnocytophaga ochracea
F0487
Contig
62
2,590,781
39.45
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
14
GCA_000277585.1
HMT-700
Capnocytophaga ochracea
Holt 25
Contig
42
2,653,757
39.5
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
15
GCA_000277665.1
HMT-700
Capnocytophaga ochracea
F0486
Contig
38
2,545,989
39.59
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
16
GCA_000318255.2
HMT-700
Capnocytophaga ochracea
F0488
Scaffold
202
2,634,285
39.51
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
17
GCA_000318315.2
HMT-700
Capnocytophaga ochracea
F0483
Scaffold
166
2,739,607
39.43
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
18
GCA_000411575.1
HMT-700
Capnocytophaga ochracea
F0502
Scaffold
30
2,788,212
39.53
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
19
GCA_001057035.1
HMT-700
Capnocytophaga ochracea
490_CAPN
Scaffold
91
2,516,120
39.68
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
20
GCA_001278825.1
HMT-700
Capnocytophaga ochracea
F0383
Complete Genome
1
2,614,527
39.68
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
21
GCA_002998835.1
HMT-700
Capnocytophaga ochracea
F0512
Complete Genome
2
2,682,541
39.47
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
22
GCA_013394735.1
HMT-700
Capnocytophaga ochracea
W10638
Complete Genome
1
2,837,214
39.26
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
23
GCA_013394785.1
HMT-700
Capnocytophaga ochracea
W10654
Contig
2
2,584,129
39.58
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
24
GCA_019930725.1
HMT-700
Capnocytophaga ochracea
FDAARGOS_1468
Complete Genome
1
2,615,469
39.59
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
Advanced Genome Table Filter
×
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Clear
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Search This Table:
All Fields
Genome-ID
Taxon-ID
Organism
Strain
Clear
Genomes from Taxa of Primary Body Sites:
(See
Preferred Body Sites
Page)
Oral
Nasal
Skin
Gut
Vaginal
Pathogen
Environmental
Reference
Unassigned
Toggle CheckBoxes On/Off
Genomes from Taxa Abundance:
High
Medium
Low
Scarce
Toggle CheckBoxes On/Off
Genomes from Taxa Status:
Named / Cultivated
Named / Uncultivated
Unnamed / Cultivated
Unnamed / Uncultivated
Dropped
Toggle CheckBoxes On/Off
Sort Column:
Genome-ID
Taxon-ID
Species
Strain
Level
Contigs
Length
GC
Reverse
Table Paging:
On
(500 rows / page)
Off
(show all filtered rows in one table)
MAGs:
Show Only MAGs
No MAGs
Default
Apply
Close