Genome Explorer: Gardnerella vaginalis UMB1686 (SEQF8011.1)
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NCBI Annotation for SEQF8011.1
| Genome selected: Gardnerella vaginalis UMB1686 | |||
| Contigs: | 7 | Bases: | 1510549 bps |
| CDS: | 20 | rRNA: | 11 |
| tmRNA: | 1 | tRNA: | 45 |
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| # | Molecule | PID | NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|
| 1001 | PNGV01000001.1 | PMC43550.1 JB | 1707 [NA] | 568 [AA] | 493408-495114 | CJ216_01835 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH |
| 1002 | PNGV01000001.1 | PMC43551.1 JB | 1158 [NA] | 385 [AA] | 548982-550139 | CJ216_02060 | amino acid ABC transporter permease |
| 1003 | PNGV01000001.1 | PMC43552.1 JB | 834 [NA] | 277 [AA] | 550818-551651 | CJ216_02070 | ABC transporter substrate-binding protein |
| 1004 | PNGV01000001.1 | PMC43553.1 JB | 771 [NA] | 256 [AA] | 551726-552496 | CJ216_02075 | glutamate ABC transporter ATP-binding protein |
| 1005 | PNGV01000001.1 | PMC43554.1 JB | 1401 [NA] | 466 [AA] | 554570-555970 | CJ216_02085 | histidine--tRNA ligase |
| 1006 | PNGV01000001.1 | PMC43555.1 JB | 1107 [NA] | 368 [AA] | 626481-627587 | CJ216_02375 | serralysin |
| 1007 | PNGV01000001.1 | PMC43556.1 JB | 1665 [NA] | 554 [AA] | 661908-663572 | CJ216_02505 | DUF501 domain-containing protein |
| 1008 | PNGV01000001.1 | PMC43557.1 JB | 828 [NA] | 275 [AA] | 666927-667754 | CJ216_02525 | ABC transporter permease |
| 1009 | PNGV01000001.1 | PMC43558.1 JB | 3558 [NA] | 1185 [AA] | 669787-673344 | CJ216_02540 | transcription-repair coupling factor |
| 1010 | PNGV01000001.1 | PMC43559.1 JB | 549 [NA] | 182 [AA] | 697641-698189 | CJ216_02625 | YraN family protein |
| 1011 | PNGV01000001.1 | PMC43560.1 JB | 729 [NA] | 242 [AA] | 703896-704624 | CJ216_02650 | GntR family transcriptional regulator |
| 1012 | PNGV01000001.1 | PMC43561.1 JB | 1245 [NA] | 414 [AA] | 713327-714571 | CJ216_02675 | acetate kinase |
| 1013 | PNGV01000001.1 | PMC43562.1 JB | 564 [NA] | 187 [AA] | 742057-742620 | CJ216_02770 | TM2 domain-containing protein |
| 1014 | PNGV01000001.1 | PMC43563.1 JB | 1884 [NA] | 627 [AA] | 762713-764596 | CJ216_02850 | cell division protein FtsK |
| 1015 | PNGV01000001.1 | PMC43564.1 JB | 699 [NA] | 232 [AA] | 780511-781209 | CJ216_02910 | transcriptional repressor LexA |
| 1016 | PNGV01000001.1 | PMC43565.1 JB | 1332 [NA] | 443 [AA] | 794496-795827 | CJ216_02965 | sodium:proton antiporter |
| 1017 | PNGV01000001.1 | PMC43566.1 JB | 423 [NA] | 140 [AA] | 798511-798933 | CJ216_02970 | hypothetical protein |
| 1018 | PNGV01000001.1 | PMC43567.1 JB | 1332 [NA] | 443 [AA] | 814236-815567 | CJ216_03035 | MFS transporter |
| 1019 | PNGV01000001.1 | PMC43568.1 JB | 1254 [NA] | 417 [AA] | 816864-818117 | CJ216_03045 | hypothetical protein |
| 1020 | PNGV01000001.1 | PMC43569.1 JB | 225 [NA] | 74 [AA] | 832156-832380 | CJ216_03120 | hypothetical protein |
| 1021 | PNGV01000001.1 | PMC43570.1 JB | 651 [NA] | 216 [AA] | 832659-833309 | CJ216_03125 | hypothetical protein |
| 1022 | PNGV01000001.1 | PMC43571.1 JB | 726 [NA] | 241 [AA] | 857834-858559 | CJ216_03255 | translation initiation factor IF-3 |
| 1023 | PNGV01000001.1 | PMC43572.1 JB | 327 [NA] | 108 [AA] | 883269-883595 | CJ216_03375 | hypothetical protein |
| 1024 | PNGV01000001.1 | PMC43573.1 JB | 849 [NA] | 282 [AA] | 893196-894044 | CJ216_03420 | phosphatase |
| 1025 | PNGV01000001.1 | PMC43574.1 JB | 1929 [NA] | 642 [AA] | 930925-932853 | CJ216_03520 | ATP-dependent helicase |
| 1026 | PNGV01000001.1 | PMC43575.1 JB | 762 [NA] | 253 [AA] | 936853-937614 | CJ216_03540 | DUF4191 domain-containing protein |
| 1027 | PNGV01000001.1 | PMC43576.1 JB | 492 [NA] | 163 [AA] | 954976-955467 | CJ216_03635 | hypothetical protein |
| 1028 | PNGV01000001.1 | PMC43577.1 JB | 624 [NA] | 207 [AA] | 962401-963024 | CJ216_03660 | abortive infection protein |
| 1029 | PNGV01000001.1 | PMC43578.1 JB | 417 [NA] | 138 [AA] | 975843-976259 | CJ216_03725 | peptidase A24 |
| 1030 | PNGV01000001.1 | PMC43579.1 JB | 975 [NA] | 324 [AA] | 1008983-1009957 | CJ216_03865 | DNA-binding protein |
| 1031 | PNGV01000001.1 | PMC43580.1 JB | 1137 [NA] | 378 [AA] | 1023444-1024580 | CJ216_03885 | class C sortase |
| 1032 | PNGV01000001.1 | PMC43581.1 JB | 285 [NA] | 94 [AA] | 1027956-1028240 | CJ216_03895 | XRE family transcriptional regulator |
| 1033 | PNGV01000001.1 | PMC43582.1 JB | 858 [NA] | 285 [AA] | 1039695-1040552 | CJ216_03930 | DeoR/GlpR transcriptional regulator |
| 1034 | PNGV01000001.1 | PMC43583.1 JB | 171 [NA] | 56 [AA] | 1104909-1105079 | CJ216_04285 | 50S ribosomal protein L33 |
| 1035 | PNGV01000001.1 | PMC43584.1 JB | 927 [NA] | 308 [AA] | 1107180-1108106 | CJ216_04315 | hypothetical protein |
| 1036 | PNGV01000001.1 | PMC43585.1 JB | 723 [NA] | 240 [AA] | 1108423-1109145 | CJ216_04320 | hypothetical protein |
| 1037 | PNGV01000001.1 | PMC43586.1 JB | 177 [NA] | 58 [AA] | 1109343-1109519 | CJ216_04325 | FmdB family transcriptional regulator |
| 1038 | PNGV01000001.1 | PMC43587.1 JB | 1470 [NA] | 489 [AA] | 1113608-1115077 | CJ216_04340 | hypothetical protein |
| 1039 | PNGV01000001.1 | PMC43588.1 JB | 1407 [NA] | 468 [AA] | 1118870-1120276 | CJ216_04365 | ATPase |
| 1040 | PNGV01000001.1 | PMC43589.1 JB | 1434 [NA] | 477 [AA] | 1123805-1125238 | CJ216_04390 | guanine permease |
| 1041 | PNGV01000001.1 | PMC43590.1 JB | 858 [NA] | 285 [AA] | 1137375-1138232 | CJ216_04450 | aldo/keto reductase |
| 1042 | PNGV01000001.1 | PMC43591.1 JB | 1404 [NA] | 467 [AA] | 1149063-1150466 | CJ216_04495 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
| 1043 | PNGV01000001.1 | PMC43592.1 JB | 261 [NA] | 86 [AA] | 1183728-1183988 | CJ216_04635 | glutaredoxin-like protein NrdH |
| 1044 | PNGV01000001.1 | PMC43593.1 JB | 255 [NA] | 84 [AA] | 1201379-1201633 | CJ216_04740 | hypothetical protein |
| 1045 | PNGV01000001.1 | PMC43594.1 JB | 855 [NA] | 284 [AA] | 1221390-1222244 | CJ216_04845 | ATP synthase F0 subunit A |
| 1046 | PNGV01000001.1 | PMC43595.1 JB | 1011 [NA] | 336 [AA] | 1223819-1224829 | CJ216_04860 | hypothetical protein |
| 1047 | PNGV01000001.1 | PMC43596.1 JB | 1434 [NA] | 477 [AA] | 1228508-1229941 | CJ216_04880 | amino acid transporter |
| 1048 | PNGV01000001.1 | PMC43597.1 JB | 702 [NA] | 233 [AA] | 1232866-1233567 | CJ216_04890 | ABC transporter ATP-binding protein |
| 1049 | PNGV01000001.1 | PMC43598.1 JB | 420 [NA] | 139 [AA] | 1286297-1286716 | CJ216_05135 | HicB family protein |
| 1050 | PNGV01000001.1 | PMC43599.1 JB | 198 [NA] | 65 [AA] | 1286716-1286913 | CJ216_05140 | addiction module toxin, HicA family |
| 1051 | PNGV01000001.1 | PMC43600.1 JB | 1335 [NA] | 444 [AA] | 1288220-1289554 | CJ216_05150 | virion core protein (lumpy skin disease virus) |
| 1052 | PNGV01000001.1 | PMC43601.1 JB | 1773 [NA] | 590 [AA] | 1296729-1298501 | CJ216_05180 | ammonia transporter |
| 1053 | PNGV01000001.1 | PMC43602.1 JB | 1416 [NA] | 471 [AA] | 1300390-1301805 | CJ216_05200 | DUF4032 domain-containing protein |
| 1054 | PNGV01000001.1 | PMC43603.1 JB | 321 [NA] | 106 [AA] | 1325849-1326169 | CJ216_05295 | membrane protein insertion efficiency factor YidD |
| 1055 | PNGV01000001.1 | PMC43604.1 JB | 2076 [NA] | 691 [AA] | 1332454-1334529 | CJ216_05330 | DNA topoisomerase (ATP-hydrolyzing) subunit B |
| 1056 | PNGV01000001.1 | PMC43605.1 JB | 474 [NA] | 157 [AA] | 1337542-1338015 | CJ216_05340 | hypothetical protein |
| 1057 | PNGV01000001.1 | PMC43606.1 JB | 1092 [NA] | 363 [AA] | 1359405-1360496 | CJ216_05440 | tryptophan--tRNA ligase |
| 1058 | PNGV01000001.1 | PMC43607.1 JB | 1302 [NA] | 433 [AA] | 1389460-1390761 | CJ216_05545 | tRNA guanosine(34) transglycosylase Tgt |
| 1059 | PNGV01000001.1 | PMC43608.1 JB | 795 [NA] | 264 [AA] | 1411385-1412179 | CJ216_05635 | NAD-dependent deacetylase |
| 1060 | PNGV01000002.1 | PMC42480.1 JB | 720 [NA] | 239 [AA] | 1014-1733 | CJ216_05655 | nitroreductase |
| 1061 | PNGV01000002.1 | PMC42481.1 JB | 903 [NA] | 300 [AA] | 2423-3325 | CJ216_05665 | hypothetical protein |
| 1062 | PNGV01000002.1 | PMC42482.1 JB | 711 [NA] | 236 [AA] | 3322-4032 | CJ216_05670 | ABC transporter ATP-binding protein |
| 1063 | PNGV01000002.1 | PMC42483.1 JB | 1212 [NA] | 403 [AA] | 4016-5227 | CJ216_05675 | ABC transporter permease |
| 1064 | PNGV01000002.1 | PMC42484.1 JB | 525 [NA] | 174 [AA] | 5255-5779 | CJ216_05680 | hypothetical protein |
| 1065 | PNGV01000002.1 | PMC42485.1 JB | 402 [NA] | 133 [AA] | 5897-6298 | CJ216_05685 | transcriptional regulator |
| 1066 | PNGV01000002.1 | PMC42486.1 JB | 372 [NA] | 123 [AA] | 6480-6851 | CJ216_05690 | hypothetical protein |
| 1067 | PNGV01000002.1 | PMC42487.1 JB | 1161 [NA] | 386 [AA] | 7013-8173 | CJ216_05695 | histidine kinase |
| 1068 | PNGV01000002.1 | PMC42488.1 JB | 672 [NA] | 223 [AA] | 8170-8841 | CJ216_05700 | DNA-binding response regulator |
| 1069 | PNGV01000002.1 | PMC42489.1 JB | 1269 [NA] | 422 [AA] | 9117-10385 | CJ216_05705 | MFS transporter |
| 1070 | PNGV01000002.1 | PMC42490.1 JB | 1533 [NA] | 510 [AA] | 10519-12051 | CJ216_05710 | aspartate aminotransferase |
| 1071 | PNGV01000002.1 | PMC42491.1 JB | 258 [NA] | 85 [AA] | 12351-12608 | CJ216_05715 | hypothetical protein |
| 1072 | PNGV01000002.1 | PMC42492.1 JB | 783 [NA] | 260 [AA] | 12641-13423 | CJ216_05720 | NADPH-dependent oxidoreductase |
| 1073 | PNGV01000002.1 | PMC42493.1 JB | 456 [NA] | 151 [AA] | 13494-13949 | CJ216_05725 | DUF4235 domain-containing protein |
| 1074 | PNGV01000002.1 | PMC42494.1 JB | 711 [NA] | 236 [AA] | 14122-14832 | CJ216_05730 | histidine phosphatase family protein |
| 1075 | PNGV01000002.1 | PMC42495.1 JB | 1347 [NA] | 448 [AA] | 14981-16327 | CJ216_05735 | ABC transporter substrate-binding protein |
| 1076 | PNGV01000002.1 | PMC42496.1 JB | 1014 [NA] | 337 [AA] | 16561-17574 | CJ216_05740 | LacI family transcriptional regulator |
| 1077 | PNGV01000002.1 | PMC42497.1 JB | 192 [NA] | 63 [AA] | 17585-17776 | CJ216_05745 | hypothetical protein |
| 1078 | PNGV01000002.1 | PMC42498.1 JB | 855 [NA] | 284 [AA] | 17875-18729 | CJ216_05750 | sugar ABC transporter permease |
| 1079 | PNGV01000002.1 | PMC42499.1 JB | 834 [NA] | 277 [AA] | 18726-19559 | CJ216_05755 | carbohydrate ABC transporter permease |
| 1080 | PNGV01000002.1 | PMC42500.1 JB | 606 [NA] | 201 [AA] | 19753-20358 | CJ216_05760 | beta-carotene 15,15'-monooxygenase |
| 1081 | PNGV01000002.1 | PMC42501.1 JB | 2244 [NA] | 747 [AA] | 20512-22755 | CJ216_05765 | 4-alpha-glucanotransferase |
| 1082 | PNGV01000002.1 | PMC42502.1 JB | 2010 [NA] | 669 [AA] | 22949-24958 | CJ216_05770 | type I pullulanase |
| 1083 | PNGV01000002.1 | PMC42503.1 JB | 921 [NA] | 306 [AA] | 25330-26250 | CJ216_05775 | sugar ABC transporter permease |
| 1084 | PNGV01000002.1 | PMC42504.1 JB | 1401 [NA] | 466 [AA] | 26247-27647 | CJ216_05780 | sugar ABC transporter permease |
| 1085 | PNGV01000002.1 | PMC42505.1 JB | 1230 [NA] | 409 [AA] | 27821-29050 | CJ216_05785 | ABC transporter substrate-binding protein |
| 1086 | PNGV01000002.1 | PMC42506.1 JB | 1707 [NA] | 568 [AA] | 29310-31016 | CJ216_05790 | alpha-amylase |
| 1087 | PNGV01000002.1 | PMC42507.1 JB | 777 [NA] | 258 [AA] | 31137-31913 | CJ216_05795 | hypothetical protein |
| 1088 | PNGV01000002.1 | PMC42508.1 JB | 2688 [NA] | 895 [AA] | 31953-34640 | CJ216_05800 | alpha-glucosidase |
| 1089 | PNGV01000002.1 | PMC42509.1 JB | 213 [NA] | 70 [AA] | 40564-40776 | CJ216_05810 | hypothetical protein |
| 1090 | PNGV01000002.1 | PMC42510.1 JB | 1071 [NA] | 356 [AA] | 41057-42127 | CJ216_05815 | glycine oxidase ThiO |
| 1091 | PNGV01000002.1 | PMC42511.1 JB | 207 [NA] | 68 [AA] | 42238-42444 | CJ216_05820 | thiamine biosynthesis protein ThiS |
| 1092 | PNGV01000002.1 | PMC42512.1 JB | 846 [NA] | 281 [AA] | 42462-43307 | CJ216_05825 | thiazole synthase |
| 1093 | PNGV01000002.1 | PMC42513.1 JB | 732 [NA] | 243 [AA] | 43344-44075 | CJ216_05830 | thiamine biosynthesis protein ThiF |
| 1094 | PNGV01000002.1 | PMC42514.1 JB | 1890 [NA] | 629 [AA] | 44323-46212 | CJ216_05835 | molecular chaperone DnaK |
| 1095 | PNGV01000002.1 | PMC42515.1 JB | 705 [NA] | 234 [AA] | 46212-46916 | CJ216_05840 | nucleotide exchange factor GrpE |
| 1096 | PNGV01000002.1 | PMC42516.1 JB | 1062 [NA] | 353 [AA] | 47044-48105 | CJ216_05845 | molecular chaperone DnaJ |
| 1097 | PNGV01000002.1 | PMC42517.1 JB | 597 [NA] | 198 [AA] | 48155-48751 | CJ216_05850 | MerR family DNA-binding transcriptional regulator |
| 1098 | PNGV01000002.1 | PMC42518.1 JB | 774 [NA] | 257 [AA] | 48705-49478 | CJ216_05855 | HAD family hydrolase |
| 1099 | PNGV01000002.1 | PMC42519.1 JB | 2358 [NA] | 785 [AA] | 49507-51864 | CJ216_05860 | penicillin-binding protein |
| 1100 | PNGV01000002.1 | PMC42520.1 JB | 1143 [NA] | 380 [AA] | 52038-53180 | CJ216_05865 | inositol-3-phosphate synthase |
| 1101 | PNGV01000002.1 | PMC42521.1 JB | 1167 [NA] | 388 [AA] | 53427-54593 | CJ216_05875 | phosphoesterase |
| 1102 | PNGV01000002.1 | PMC42522.1 JB | 2862 [NA] | 953 [AA] | 54725-57586 | CJ216_05880 | type I DNA topoisomerase |
| 1103 | PNGV01000002.1 | PMC42523.1 JB | 705 [NA] | 234 [AA] | 57650-58354 | CJ216_05885 | dTMP kinase |
| 1104 | PNGV01000002.1 | PMC42524.1 JB | 1170 [NA] | 389 [AA] | 58389-59558 | CJ216_05890 | DNA polymerase III subunit delta' |
| 1105 | PNGV01000002.1 | PMC42525.1 JB | 1080 [NA] | 359 [AA] | 59579-60658 | CJ216_05895 | LacI family transcriptional regulator |
| 1106 | PNGV01000002.1 | PMC42526.1 JB | 267 [NA] | 88 [AA] | 60757-61023 | CJ216_05900 | HPr family phosphocarrier protein |
| 1107 | PNGV01000002.1 | PMC42527.1 JB | 1659 [NA] | 552 [AA] | 61291-62949 | CJ216_05905 | phosphoenolpyruvate--protein phosphotransferase |
| 1108 | PNGV01000002.1 | PMC42528.1 JB | 450 [NA] | 149 [AA] | 63034-63483 | CJ216_05910 | PTS ascorbate transporter subunit IIA |
| 1109 | PNGV01000002.1 | PMC42529.1 JB | 270 [NA] | 89 [AA] | 63545-63814 | CJ216_05915 | PTS ascorbate transporter subunit IIB |
| 1110 | PNGV01000002.1 | PMC42530.1 JB | 1518 [NA] | 505 [AA] | 63869-65386 | CJ216_05920 | PTS ascorbate transporter subunit IIC |
| 1111 | PNGV01000002.1 | PMC42531.1 JB | 552 [NA] | 183 [AA] | 65731-66282 | CJ216_05925 | YbhB/YbcL family Raf kinase inhibitor-like protein |
| 1112 | PNGV01000002.1 | PMC42532.1 JB | 1608 [NA] | 535 [AA] | 66358-67965 | CJ216_05930 | dipeptidase |
| 1113 | PNGV01000002.1 | PMC42533.1 JB | 270 [NA] | 89 [AA] | 70616-70885 | CJ216_05945 | hypothetical protein |
| 1114 | PNGV01000002.1 | PMC42534.1 JB | 627 [NA] | 208 [AA] | 70876-71502 | CJ216_05950 | hypothetical protein |
| 1115 | PNGV01000002.1 | PMC42535.1 JB | 1878 [NA] | 625 [AA] | 71807-73684 | CJ216_05955 | methionine--tRNA ligase |
| 1116 | PNGV01000002.1 | PMC42536.1 JB | 1455 [NA] | 484 [AA] | 74316-75770 | CJ216_05960 | aminopeptidase |
| 1117 | PNGV01000002.1 | PMC42537.1 JB | 921 [NA] | 306 [AA] | 76398-77318 | CJ216_05965 | ABC transporter permease |
| 1118 | PNGV01000002.1 | PMC42538.1 JB | 948 [NA] | 315 [AA] | 77346-78293 | CJ216_05970 | ABC transporter permease |
| 1119 | PNGV01000002.1 | PMC42539.1 JB | 1890 [NA] | 629 [AA] | 78315-80204 | CJ216_05975 | peptide ABC transporter ATP-binding protein |
| 1120 | PNGV01000002.1 | PMC42540.1 JB | 1755 [NA] | 584 [AA] | 80516-82270 | CJ216_05980 | ABC transporter substrate-binding protein |
| 1121 | PNGV01000002.1 | PMC42541.1 JB | 1815 [NA] | 604 [AA] | 82465-84279 | CJ216_05985 | ABC transporter ATP-binding protein |
| 1122 | PNGV01000002.1 | PMC42542.1 JB | 1797 [NA] | 598 [AA] | 84282-86078 | CJ216_05990 | multidrug ABC transporter ATP-binding protein |
| 1123 | PNGV01000002.1 | PMC42543.1 JB | 981 [NA] | 326 [AA] | 86175-87155 | CJ216_05995 | hydrolase TatD |
| 1124 | PNGV01000002.1 | PMC42544.1 JB | 2580 [NA] | 859 [AA] | 87329-89908 | CJ216_06000 | potassium transporter Kup |
| 1125 | PNGV01000002.1 | PMC42545.1 JB | 255 [NA] | 84 [AA] | 1851-2105 | CJ216_05660 | transcriptional regulator |
| 1126 | PNGV01000002.1 | PMC42546.1 JB | 5115 [NA] | 1704 [AA] | 35405-40519 | CJ216_05805 | hypothetical protein |
| 1127 | PNGV01000002.1 | PMC42547.1 JB | 1533 [NA] | 510 [AA] | 67999-69531 | CJ216_05935 | formate--tetrahydrofolate ligase |
| 1128 | PNGV01000002.1 | PMC42548.1 JB | 894 [NA] | 297 [AA] | 69636-70529 | CJ216_05940 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase |
| 1129 | PNGV01000002.1 | PMC42549.1 JB | 816 [NA] | 271 [AA] | 89956-90771 | CJ216_06005 | phosphohydrolase |
| 1130 | PNGV01000007.1 | PMC42479.1 JB | 327 [NA] | 109 [AA] | <1->327 | CJ216_06045 | hypothetical protein |