Genome Explorer: Gardnerella vaginalis UGent 09.48 (SEQF8000.1)
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PROKKA Annotation for SEQF8000.1
| Genome selected: Gardnerella vaginalis UGent 09.48 | |||
| Contigs: | 3 | Bases: | 1470925 bps |
| CDS: | 1109 | rRNA: | 3 |
| tmRNA: | 1 | tRNA: | 45 |
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| # | Molecule | PID | Genome Viewer |
NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|---|
| 1001 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01056 | open | 2031 [NA] | 676 [AA] | 1323552-1325582 | hypothetical protein | |
| 1002 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01057 | open | 1347 [NA] | 448 [AA] | 1325598-1326944 | hypothetical protein | |
| 1003 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01058 | open | 462 [NA] | 153 [AA] | 1327066-1327527 | hypothetical protein | |
| 1004 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01059 | open | 1629 [NA] | 542 [AA] | 1327916-1329544 | hypothetical protein | |
| 1005 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01060 | open | 861 [NA] | 286 [AA] | 1329997-1330857 | hypothetical protein | |
| 1006 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01061 | open | 696 [NA] | 231 [AA] | 1331470-1332165 | rplA | 50S ribosomal protein L1 |
| 1007 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01062 | open | 432 [NA] | 143 [AA] | 1332180-1332611 | rplK | 50S ribosomal protein L11 |
| 1008 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01063 | open | 354 [NA] | 117 [AA] | 1333315-1333668 | hypothetical protein | |
| 1009 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01064 | open | 1368 [NA] | 455 [AA] | 1334015-1335382 | hypothetical protein | |
| 1010 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01065 | open | 141 [NA] | 46 [AA] | 1335499-1335639 | hypothetical protein | |
| 1011 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01066 | open | 1011 [NA] | 336 [AA] | 1335569-1336579 | hypothetical protein | |
| 1012 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01067 | open | 1908 [NA] | 635 [AA] | 1337382-1339289 | Fimbrial subunit type 1 | |
| 1013 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01068 | open | 2373 [NA] | 790 [AA] | 1339532-1341904 | hypothetical protein | |
| 1014 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01069 | open | 912 [NA] | 303 [AA] | 1342237-1343148 | nusG | Transcription terminationantitermination protein NusG |
| 1015 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01070 | open | 228 [NA] | 75 [AA] | 1343190-1343417 | secE | Protein translocase subunit SecE |
| 1016 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01072 | open | 1239 [NA] | 412 [AA] | 1343687-1344925 | aspC1 | Aspartate aminotransferase |
| 1017 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01073 | open | 1146 [NA] | 381 [AA] | 1345245-1346390 | proB | Glutamate 5-kinase |
| 1018 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01074 | open | 1683 [NA] | 560 [AA] | 1346416-1348098 | obg | GTPase Obg |
| 1019 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01075 | open | 252 [NA] | 83 [AA] | 1348246-1348497 | rpmA | 50S ribosomal protein L27 |
| 1020 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01076 | open | 309 [NA] | 102 [AA] | 1348531-1348839 | rplU | 50S ribosomal protein L21 |
| 1021 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01077 | open | 3288 [NA] | 1095 [AA] | 1349014-1352301 | rne | Ribonuclease E |
| 1022 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01078 | open | 942 [NA] | 313 [AA] | 1352696-1353637 | hypothetical protein | |
| 1023 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01079 | open | 396 [NA] | 131 [AA] | 1353653-1354048 | hypothetical protein | |
| 1024 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01080 | open | 1440 [NA] | 479 [AA] | 1353859-1355298 | dTTPUTP pyrophosphatase | |
| 1025 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01081 | open | 1077 [NA] | 358 [AA] | 1355332-1356408 | thrB | Homoserine kinase |
| 1026 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01082 | open | 1374 [NA] | 457 [AA] | 1356427-1357800 | hom | Homoserine dehydrogenase |
| 1027 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01083 | open | 993 [NA] | 330 [AA] | 1357862-1358854 | hypothetical protein | |
| 1028 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01084 | open | 1143 [NA] | 380 [AA] | 1358956-1360098 | ddl | D-alanine--D-alanine ligase |
| 1029 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01085 | open | 996 [NA] | 331 [AA] | 1360171-1361166 | gpsA | Glycerol-3-phosphate dehydrogenase [NAD(P)+] |
| 1030 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01086 | open | 885 [NA] | 294 [AA] | 1361308-1362192 | hypothetical protein | |
| 1031 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01087 | open | 864 [NA] | 287 [AA] | 1362213-1363076 | mntB_2 | Manganese transport system membrane protein MntB |
| 1032 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01088 | open | 822 [NA] | 273 [AA] | 1363076-1363897 | btuD_12 | Vitamin B12 import ATP-binding protein BtuD |
| 1033 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01089 | open | 1779 [NA] | 592 [AA] | 1363885-1365663 | hypothetical protein | |
| 1034 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01090 | open | 2229 [NA] | 742 [AA] | 1365682-1367910 | hypothetical protein | |
| 1035 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01091 | open | 1206 [NA] | 401 [AA] | 1367891-1369096 | hypothetical protein | |
| 1036 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01092 | open | 2295 [NA] | 764 [AA] | 1369128-1371422 | hypothetical protein | |
| 1037 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01093 | open | 555 [NA] | 184 [AA] | 1371675-1372229 | pncA | Nicotinamidasepyrazinamidase |
| 1038 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01094 | open | 540 [NA] | 179 [AA] | 1372577-1373116 | hypothetical protein | |
| 1039 | SEQF8000.1_QJUW01000001.1 | SEQF8000.1_01095 | open | 1251 [NA] | 416 [AA] | 1373250-1374500 | hypothetical protein | |
| 1040 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01096 | open | 750 [NA] | 249 [AA] | 339-1088 | cnbA | Chloronitrobenzene nitroreductase |
| 1041 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01097 | open | 282 [NA] | 93 [AA] | 1179-1460 | hypothetical protein | |
| 1042 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01098 | open | 372 [NA] | 123 [AA] | 1641-2012 | hypothetical protein | |
| 1043 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01099 | open | 1161 [NA] | 386 [AA] | 2174-3334 | hypothetical protein | |
| 1044 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01100 | open | 672 [NA] | 223 [AA] | 3331-4002 | liaR | Transcriptional regulatory protein LiaR |
| 1045 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01101 | open | 903 [NA] | 300 [AA] | 4478-5380 | hypothetical protein | |
| 1046 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01102 | open | 705 [NA] | 234 [AA] | 5383-6087 | yknY | putative ABC transporter ATP-binding protein YknY |
| 1047 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01103 | open | 1212 [NA] | 403 [AA] | 6071-7282 | hypothetical protein | |
| 1048 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01104 | open | 525 [NA] | 174 [AA] | 7310-7834 | hypothetical protein | |
| 1049 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01105 | open | 1263 [NA] | 420 [AA] | 7879-9141 | hypothetical protein | |
| 1050 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01106 | open | 1572 [NA] | 523 [AA] | 9278-10849 | dapL | LL-diaminopimelate aminotransferase |
| 1051 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01107 | open | 783 [NA] | 260 [AA] | 11436-12218 | nfrA1 | FMN reductase (NADPH) |
| 1052 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01108 | open | 459 [NA] | 152 [AA] | 12287-12745 | hypothetical protein | |
| 1053 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01109 | open | 711 [NA] | 236 [AA] | 12915-13625 | gpm2 | Acid phosphatase |
| 1054 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01111 | open | 1344 [NA] | 447 [AA] | 13986-15329 | hypothetical protein | |
| 1055 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01112 | open | 1014 [NA] | 337 [AA] | 15492-16505 | cytR_2 | HTH-type transcriptional repressor CytR |
| 1056 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01113 | open | 843 [NA] | 280 [AA] | 16816-17658 | melD | Melibioseraffinosestachyose import permease protein MelD |
| 1057 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01114 | open | 834 [NA] | 277 [AA] | 17655-18488 | ngcG | Diacetylchitobiose uptake system permease protein NgcG |
| 1058 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01115 | open | 612 [NA] | 203 [AA] | 18677-19288 | hypothetical protein | |
| 1059 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01116 | open | 2250 [NA] | 749 [AA] | 19472-21721 | malQ_2 | 4-alpha-glucanotransferase |
| 1060 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01117 | open | 2010 [NA] | 669 [AA] | 22001-24010 | pulA | Pullulanase |
| 1061 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01118 | open | 924 [NA] | 307 [AA] | 24323-25246 | dasC | Diacetylchitobiose uptake system permease protein DasC |
| 1062 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01119 | open | 1407 [NA] | 468 [AA] | 25243-26649 | hypothetical protein | |
| 1063 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01120 | open | 1230 [NA] | 409 [AA] | 26809-28038 | cycB | Cyclodextrin-binding protein |
| 1064 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01121 | open | 1701 [NA] | 566 [AA] | 28297-29997 | treS | Trehalose synthaseamylase TreS |
| 1065 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01122 | open | 837 [NA] | 278 [AA] | 30075-30911 | hypothetical protein | |
| 1066 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01123 | open | 1026 [NA] | 341 [AA] | 31060-32085 | cytR_3 | HTH-type transcriptional repressor CytR |
| 1067 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01124 | open | 1386 [NA] | 461 [AA] | 32359-33744 | hypothetical protein | |
| 1068 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01125 | open | 936 [NA] | 311 [AA] | 33792-34727 | ngcF | Diacetylchitobiose uptake system permease protein NgcF |
| 1069 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01126 | open | 912 [NA] | 303 [AA] | 34724-35635 | araQ_2 | L-arabinose transport system permease protein AraQ |
| 1070 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01127 | open | 2748 [NA] | 915 [AA] | 35762-38509 | hypothetical protein | |
| 1071 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01129 | open | 1071 [NA] | 356 [AA] | 38808-39878 | thiO | Glycine oxidase |
| 1072 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01130 | open | 207 [NA] | 68 [AA] | 40001-40207 | hypothetical protein | |
| 1073 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01131 | open | 813 [NA] | 270 [AA] | 40297-41109 | thiG_2 | Thiazole synthase |
| 1074 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01132 | open | 732 [NA] | 243 [AA] | 41146-41877 | moeZ | putative adenylyltransferasesulfurtransferase MoeZ |
| 1075 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01133 | open | 1884 [NA] | 627 [AA] | 42146-44029 | dnaK | Chaperone protein DnaK |
| 1076 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01134 | open | 696 [NA] | 231 [AA] | 44029-44724 | grpE | Protein GrpE |
| 1077 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01135 | open | 1053 [NA] | 350 [AA] | 44851-45903 | cbpA | Curved DNA-binding protein |
| 1078 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01136 | open | 597 [NA] | 198 [AA] | 45991-46587 | hypothetical protein | |
| 1079 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01137 | open | 744 [NA] | 247 [AA] | 46738-47481 | gph | Phosphoglycolate phosphatase |
| 1080 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01138 | open | 2325 [NA] | 774 [AA] | 47598-49922 | ponA1_2 | Penicillin-binding protein 1A |
| 1081 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01139 | open | 1143 [NA] | 380 [AA] | 50095-51237 | ino1 | Inositol-3-phosphate synthase |
| 1082 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01141 | open | 1317 [NA] | 438 [AA] | 51421-52737 | hypothetical protein | |
| 1083 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01142 | open | 2856 [NA] | 951 [AA] | 52869-55724 | topA | DNA topoisomerase 1 |
| 1084 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01143 | open | 705 [NA] | 234 [AA] | 55772-56476 | tmk | Thymidylate kinase |
| 1085 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01144 | open | 1179 [NA] | 392 [AA] | 56531-57709 | hypothetical protein | |
| 1086 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01145 | open | 1080 [NA] | 359 [AA] | 57722-58801 | galR | HTH-type transcriptional regulator GalR |
| 1087 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01146 | open | 267 [NA] | 88 [AA] | 58901-59167 | ptsH | Phosphocarrier protein HPr |
| 1088 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01147 | open | 1659 [NA] | 552 [AA] | 59443-61101 | ptsI | Phosphoenolpyruvate-protein phosphotransferase |
| 1089 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01148 | open | 450 [NA] | 149 [AA] | 61206-61655 | hypothetical protein | |
| 1090 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01149 | open | 270 [NA] | 89 [AA] | 61719-61988 | ulaB | Ascorbate-specific PTS system EIIB component |
| 1091 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01150 | open | 1533 [NA] | 510 [AA] | 62105-63637 | ulaA_2 | Ascorbate-specific PTS system EIIC component |
| 1092 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01151 | open | 552 [NA] | 183 [AA] | 63861-64412 | hypothetical protein | |
| 1093 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01152 | open | 1608 [NA] | 535 [AA] | 64524-66131 | pepD | Dipeptidase |
| 1094 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01153 | open | 1518 [NA] | 505 [AA] | 66360-67877 | fhs | Formate--tetrahydrofolate ligase |
| 1095 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01154 | open | 843 [NA] | 280 [AA] | 68093-68935 | hypothetical protein | |
| 1096 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01155 | open | 903 [NA] | 300 [AA] | 69065-69967 | rsmI | Ribosomal RNA small subunit methyltransferase I |
| 1097 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01156 | open | 264 [NA] | 87 [AA] | 69999-70262 | hypothetical protein | |
| 1098 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01157 | open | 627 [NA] | 208 [AA] | 70253-70879 | hypothetical protein | |
| 1099 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01158 | open | 1872 [NA] | 623 [AA] | 71184-73055 | metG | Methionine--tRNA ligase |
| 1100 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01159 | open | 1542 [NA] | 513 [AA] | 73397-74938 | pepC_2 | Aminopeptidase C |
| 1101 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01160 | open | 984 [NA] | 327 [AA] | 75399-76382 | Putative peptide transport permease protein | |
| 1102 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01161 | open | 948 [NA] | 315 [AA] | 76407-77354 | Putative peptide transport permease protein | |
| 1103 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01162 | open | 1890 [NA] | 629 [AA] | 77376-79265 | putative ABC transporter ATP-binding protein | |
| 1104 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01163 | open | 1743 [NA] | 580 [AA] | 79589-81331 | putative protein | |
| 1105 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01164 | open | 1815 [NA] | 604 [AA] | 81511-83325 | Putative multidrug export ATP-bindingpermease protein | |
| 1106 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01165 | open | 1797 [NA] | 598 [AA] | 83328-85124 | putative ABC transporter ATP-binding protein | |
| 1107 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01166 | open | 981 [NA] | 326 [AA] | 85179-86159 | dtd3 | D-aminoacyl-tRNA deacylase |
| 1108 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01167 | open | 2634 [NA] | 877 [AA] | 86324-88957 | kup | Low affinity potassium transport system protein kup |
| 1109 | SEQF8000.1_QJUW01000002.1 | SEQF8000.1_01168 | open | 816 [NA] | 271 [AA] | 88981-89796 | hypothetical protein |