16S rRNA RefSeq: V15.22    Genomic RefSeq: V9.15
Download HOMD Data


Genomic Meta Information::Batch Downloads
TypeFormats
Sequence Meta Information [page]Tab Delimited Text
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Phylogenetics
TypeFormats
Phylogenetic tree of HOMD 16S rRNA Reference Sequences svg newick Sequence ID table
Phylogenetic tree of 16S rRNA gene sequences identified in HOMD genomes svg newick Sequence ID table
Phylogenomic tree based on conserved proteins identified from HOMD genomes svg newick Sequence ID table
Phylogenetic tree of ribosomal proteins identified from HOMD genomes svg newick Sequence ID table

Download HOMD 16S rRNA Gene Sequences
[View Version History]
Date Version Name
HOMD 16S rRNA RefSeq *Right-click to download
or click to open
2021-02-09eHOMD 16S rRNA RefSeq Version 15.22 (Starts from position 28) [Download]
2021-02-09eHOMD 16S rRNA RefSeq Version 15.22 (Starts from position 9) [Download]
2017-11-16eHOMD 16S rRNA RefSeq Version 15.1 (Starts from position 28) [Download]
2017-11-16eHOMD 16S rRNA RefSeq Version 15.1 (Starts from position 9) [Download]
2017-01-03HOMD 16S rRNA RefSeq Version 14.51 (Starts from position 28) [Download]
2017-01-03HOMD 16S rRNA RefSeq Version 14.51 (Starts from position 9) [Download]
2016-03-29HOMD 16S rRNA RefSeq Version 14.5 (Starts from position 28) [Download]
2016-03-29HOMD 16S rRNA RefSeq Version 14.5 (Starts from position 9) [Download]
2013-05-08HOMD 16S rRNA RefSeq Version 13.2 (Starts at position 28) [Download]
2013-05-08HOMD 16S rRNA RefSeq Version 13.2 (Starts at position 9) [Download]
2013-03-25HOMD 16S rRNA RefSeq Version 13.0 [Download]
2013-01-16HOMD 16S rRNA RefSeq Version 12.0 [Download]
2012-02-16HOMD 16S rRNA RefSeq Version 11.0 [Download]
2010-02-08HOMD 16S rRNA RefSeq Version 10.1 [Download]
2009-02-03HOMD 16S rRNA RefSeq Version 10 [Download]
HOMD 16S rRNA Extended RefSeq *
2010-02-19HOMD 16S rRNA RefSeq Extended Version 1.1 [Download]
2009-02-25HOMD 16S rRNA RefSeq Extended Version 1 [Download]
HOMD 16S rRNA Gene Sequence Clonal Collection
2010-02-07HOMD 16S rRNA Gene Sequence Clonal Collection Version 1 [Download]
eHOMD 16S rRNA training sequence sets
2018-12-03eHOMD 16S rRNA full-length training set [Download]
2018-12-03eHOMD 16S rRNA V1V3 training set [Download]
Other training set related files [link to FTP site] [Link Out]
Other Download Formats
2021-02-09eHOMD 16S rRNA RefSeq Version 15.22 Aligned FASTA File [Download]
2021-02-09eHOMD 16S rRNA RefSeq Version 15.22 Taxonomy File for MOTHUR [Download]
2021-02-09eHOMD 16S rRNA RefSeq Version 15.22 Taxonomy File for QIIME [Download]
2017-11-16eHOMD 16S rRNA RefSeq Version 15.1 Aligned FASTA File [Download]
2017-11-16eHOMD 16S rRNA RefSeq Version 15.1 Taxonomy File for MOTHUR [Download]
2017-11-16eHOMD 16S rRNA RefSeq Version 15.1 Taxonomy File for QIIME [Download]
2017-01-03HOMD 16S rRNA RefSeq Version 14.51 Aligned FASTA File [Download]
2017-01-03HOMD 16S rRNA RefSeq Version 14.51 Taxonomy File for MOTHUR [Download]
2017-01-03HOMD 16S rRNA RefSeq Version 14.51 Taxonomy File for QIIME [Download]
2016-03-29HOMD 16S rRNA RefSeq Version 14.5 Aligned FASTA File [Download]
2016-03-29HOMD 16S rRNA RefSeq Version 14.5 Taxonomy File for MOTHUR [Download]
2016-03-29HOMD 16S rRNA RefSeq Version 14.5 Taxonomy File for QIIME [Download]
2013-05-08HOMD 16S rRNA RefSeq Version 13.2 Aligned FASTA File [Download]
2013-05-08HOMD 16S rRNA RefSeq Version 13.2 FASTA File in QIIME Format [Download]
2014-09-11HOMD 16S rRNA RefSeq Version 13.2 FASTA File for mothur [Download]
2014-09-11HOMD 16S rRNA RefSeq Version 13.2 Taxonomy File for mothur [Download]
* These sequences are corrected consensus sequences. Many have been corrected and extended based on alignment with other sequences for that taxon and Ns and indels removed. Therefore, for many sequences, there will be differences between the Reference Sequence and the GenBank sequence listed in the header information. We have not yet updated our own GenBank sequences, and can not update those from other depositors. We believe these are currently the best reference sequences available, and for the purposes of BLAST analysis, have the advantage of being of a uniform length.