HOMD ::subspecies::subsp._dentisani_clade

Subspecies: subsp._dentisani_clade_058

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Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus oralis; subsp._dentisani_clade_058

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	1.202	1.436	5.054	5.240	4.088	1.257	1.780	1.967	1.241	0.003
10^thp	0.252	0.452	2.775	2.920	1.704	0.277	0.274	0.319	0.284	0.000
90^thp	2.288	3.179	7.431	7.392	6.540	2.693	4.315	5.234	2.802	0.010
Stdev	1.058	0.974	1.839	1.746	1.914	0.939	1.617	1.879	0.945	0.005
Prev	100.000	100.000	100.000	100.000	100.000	97.403	100.000	100.000	100.000	54.545

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.

Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.

Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.781	1.026	6.781	7.528	6.040	1.399	3.054	2.616	1.393	0.002
10^thp	0.130	0.246	2.164	3.072	1.613	0.421	0.422	0.340	0.425	0.000
90^thp	1.560	1.805	11.796	12.477	12.584	2.598	7.227	5.588	2.748	0.005
Stdev	0.903	1.228	4.018	3.665	4.157	0.910	3.066	2.784	1.002	0.005
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	18.881

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	1.496	2.397	2.486	2.889	1.537	1.319	1.010	0.936	0.854	0.002
10^thp	0.069	0.392	0.309	0.723	0.170	0.152	0.099	0.055	0.069	0.000
90^thp	3.028	4.434	4.748	6.823	3.705	3.333	2.416	1.950	2.418	0.002
Stdev	2.295	2.255	3.325	2.155	1.458	1.738	1.018	1.491	1.090	0.007
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	10.000

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