HOMD ::subspecies::clade

Subspecies: clade_578

Download Options

Full Lineage: Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus cristatus; clade_578

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.688	0.756	4.764	4.649	3.280	0.789	1.410	1.603	0.601	0.003
10^thp	0.121	0.200	2.595	2.124	1.203	0.174	0.164	0.208	0.131	0.000
90^thp	1.481	1.612	6.873	7.260	5.880	1.447	3.628	4.429	1.309	0.009
Stdev	0.934	0.566	1.800	1.915	1.770	0.579	1.512	1.784	0.487	0.004
Prev	100.000	100.000	100.000	100.000	100.000	97.403	100.000	100.000	100.000	49.351

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.049	0.073	0.032	0.163	0.495	0.311	0.476	0.419	0.849	0.001
10^thp	0.000	0.000	0.000	0.015	0.094	0.057	0.107	0.077	0.184	0.000
90^thp	0.119	0.159	0.099	0.416	1.050	0.667	1.016	0.936	1.746	0.003
Stdev	0.089	0.112	0.071	0.203	0.445	0.326	0.395	0.384	0.737	0.004
Prev	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 073, 578, and 638 were assigned one-third to each taxon.

Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	1.414	2.213	3.217	4.054	2.582	1.310	1.831	1.210	1.925	0.002
10^thp	0.051	0.310	0.199	0.548	0.296	0.288	0.192	0.105	0.115	0.000
90^thp	3.399	5.371	4.724	7.958	4.588	2.735	5.276	3.347	6.607	0.001
Stdev	2.448	1.831	6.826	4.883	4.230	1.704	2.393	1.683	3.532	0.007
Prev	100.000	100.000	100.000	100.000	100.000	100.000	100.000	96.774	100.000	10.000

Copyright 2007-2021 The Forsyth Institute

Hosted on Amazon AWS EC2