Subspecies: clade-169 (HMT-169)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.469 | 2.574 | 0.342 | 0.949 | 0.114 | 0.205 | 0.000 | 0.026 | 0.000 | 0.048 | 0.000 | 0.011 | 0.076 | 0.056 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.020 | 0.052 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 5.722 | 6.969 | 0.739 | 2.532 | 0.272 | 0.620 | 0.000 | 0.033 | 0.000 | 0.122 | 0.000 | 0.009 | 0.205 | 0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 5.105 | 4.196 | 0.796 | 2.018 | 0.202 | 0.294 | 0.000 | 0.158 | 0.000 | 0.135 | 0.000 | 0.065 | 0.307 | 0.198 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 90.728 | 94.040 | 76.923 | 86.986 | 71.812 | 69.231 | 0.000 | 32.000 | 0.000 | 36.333 | 0.000 | 11.331 | 20.115 | 18.433 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.564 | 3.253 | 1.150 | 1.617 | 0.245 | 0.331 | 0.114 | 0.053 | 0.043 | 0.076 | 0.093 | 0.078 | 0.135 | 0.194 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.095 | 0.200 | 0.000 | 0.041 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 6.310 | 8.240 | 2.260 | 4.099 | 0.561 | 0.806 | 0.261 | 0.088 | 0.103 | 0.205 | 0.124 | 0.057 | 0.176 | 0.265 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 4.942 | 4.530 | 3.937 | 2.772 | 0.453 | 0.547 | 0.363 | 0.301 | 0.110 | 0.220 | 0.427 | 0.588 | 0.767 | 0.871 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 97.037 | 98.049 | 69.383 | 93.548 | 76.215 | 86.905 | 47.352 | 39.903 | 54.015 | 44.061 | 28.344 | 21.296 | 37.931 | 39.333 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to HMT 169 and 893 were assigned half to each taxon.
Reads equally close to HMT 169 and 175 were assigned half to each taxon.
Reads equally close to HMT 169 and 893 were assigned half to each taxon.
Reads equally close to HMT 169 and 175 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.872 | 3.016 | 0.280 | 0.404 | 0.195 | 0.062 | 0.024 | 0.032 | 0.005 | 0.001 |
| 10thp | 0.003 | 0.016 | 0.000 | 0.011 | 0.000 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 5.581 | 7.900 | 0.302 | 1.132 | 0.532 | 0.140 | 0.030 | 0.009 | 0.012 | 0.000 |
| Stdev | 4.767 | 6.737 | 1.245 | 0.742 | 0.290 | 0.124 | 0.063 | 0.159 | 0.008 | 0.005 |
| Prev(%) | 91.892 | 97.059 | 76.744 | 97.143 | 78.571 | 94.000 | 72.727 | 64.516 | 60.000 | 5.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
reads equally close to A. sp. HMT 169 and A. sp. HMT 175 were assigned half to each taxon
reads equally close to A. sp. HMT 169 and A. sp. HMT 175 were assigned half to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.554 | 1.923 | 0.143 | 0.502 | 0.067 | 0.103 | 0.022 | 0.022 | 0.006 | 0.000 |
| 10thp | 0.003 | 0.015 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 3.231 | 4.547 | 0.363 | 1.408 | 0.150 | 0.299 | 0.073 | 0.055 | 0.020 | 0.000 |
| Stdev | 3.204 | 3.593 | 0.389 | 1.062 | 0.143 | 0.157 | 0.047 | 0.049 | 0.018 | 0.000 |
| Prev(%) | 89.610 | 92.208 | 58.442 | 80.519 | 71.429 | 64.935 | 40.260 | 41.558 | 25.974 | 1.299 |
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.
Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.446 | 0.536 | 0.030 | 0.119 | 0.026 | 0.027 | 0.015 | 0.014 | 0.003 | 0.000 |
| 10thp | 0.020 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.087 | 1.184 | 0.065 | 0.235 | 0.056 | 0.062 | 0.023 | 0.019 | 0.009 | 0.000 |
| Stdev | 0.901 | 0.911 | 0.083 | 0.282 | 0.070 | 0.036 | 0.074 | 0.099 | 0.006 | 0.000 |
| Prev(%) | 95.946 | 97.297 | 47.973 | 83.108 | 73.649 | 77.703 | 50.676 | 41.216 | 31.757 | 1.399 |
