HOMD ::Species:Streptococcus sp. HMT-057

Species: Streptococcus sp. HMT-057 (HMT-057)

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sp. HMT-057 Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-057: Body Sites Data | HMT-057: Taxon Description | Life Page: Streptococcus sp. HMT-057

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to S. parasanguinis clade 411, S. peroris, and S. sp. HMT 057 were assigned one third to each taxon

reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.002	0.002	0.006	0.017	0.049	0.037	0.062	0.061	0.129	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.003	0.000
90^thp	0.006	0.008	0.017	0.049	0.118	0.070	0.159	0.123	0.366	0.000
Stdev	0.003	0.005	0.015	0.034	0.086	0.119	0.119	0.120	0.233	0.000
Prev(%)	20.779	20.779	29.870	62.338	80.519	51.948	59.740	76.623	89.610	1.299

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.049	0.073	0.032	0.163	0.495	0.311	0.476	0.419	0.849	0.001
10^thp	0.000	0.000	0.000	0.015	0.094	0.057	0.107	0.077	0.184	0.000
90^thp	0.119	0.159	0.099	0.416	1.050	0.667	1.016	0.936	1.746	0.003
Stdev	0.089	0.112	0.071	0.203	0.445	0.326	0.395	0.384	0.737	0.004
Prev(%)	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

Dewhirst (35x9) (not published)

Notes:
Reads equally close to HMT 057 and 411 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.004	0.008	0.307	0.134	0.202	0.433	0.492	0.390	0.693	0.000
10^thp	0.000	0.000	0.000	0.002	0.012	0.035	0.042	0.023	0.026	0.000
90^thp	0.013	0.022	1.478	0.491	0.557	1.023	1.229	1.078	1.718	0.000
Stdev	0.007	0.014	0.686	0.203	0.237	0.501	0.639	0.583	1.142	0.000
Prev(%)	44.595	55.882	79.070	88.571	100.000	100.000	100.000	96.774	97.500	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

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