HOMD ::Species:Streptococcus parasanguinis

Species: Streptococcus parasanguinis (HMT-411)

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasanguinis Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-411: Body Sites Data | HMT-411: Taxon Description | Life Page: Streptococcus parasanguinis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.040	0.038	0.143	0.567	2.102	1.465	2.491	2.198	4.151	0.014
10^thp	0.000	0.000	0.003	0.021	0.264	0.111	0.314	0.338	0.597	0.000
90^thp	0.055	0.082	0.380	1.470	4.991	2.677	6.035	5.659	9.417	0.034
Stdev	0.142	0.089	0.325	1.007	2.342	2.390	2.269	2.343	4.037	0.048
Prev(%)	57.143	68.831	96.104	97.403	100.000	97.403	98.701	100.000	100.000	18.182

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.098	0.147	0.063	0.325	0.991	0.623	0.952	0.838	1.699	0.002
10^thp	0.000	0.000	0.000	0.030	0.189	0.115	0.215	0.155	0.369	0.000
90^thp	0.239	0.317	0.197	0.833	2.100	1.334	2.033	1.872	3.492	0.006
Stdev	0.177	0.224	0.141	0.406	0.889	0.652	0.791	0.768	1.475	0.009
Prev(%)	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-411 and HMT-721 were assigned to each taxon in proportion to the abundance of HMT-411 and HMT-721 individually at these sites (BMU,HPA,PTO,SAL,THR,TDO).

Neither HMT-411 nor HMT-721 were present singularly so these reads were split evenly at this site (STO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.015	0.053	0.040	0.143	0.098	0.125	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.011
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.029	0.115	0.083	0.278	0.154	0.325	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.014
Stdev	0.000	0.000	0.000	0.065	0.184	0.115	0.400	0.302	0.327	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.066
Prev(%)	0.000	0.000	0.000	52.055	47.651	70.000	83.929	74.000	81.935	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	39.869

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

Dewhirst (35x9) (not published)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.115	0.289	0.821	1.383	3.282	5.192	5.927	6.688	7.506	0.007
10^thp	0.000	0.004	0.007	0.064	0.635	0.452	0.434	0.761	0.068	0.000
90^thp	0.219	0.525	2.286	3.156	6.816	12.771	10.651	19.300	22.303	0.012
Stdev	0.254	0.793	1.676	1.982	2.851	5.009	5.105	8.232	8.189	0.021
Prev(%)	87.838	94.118	100.000	100.000	100.000	100.000	100.000	100.000	100.000	15.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.035	0.041	0.234	0.090	0.601	1.090	1.002	1.379	1.665	4.153	0.028	0.000	0.002	0.040	0.037	0.009	0.018	0.038
10^thp	0.000	0.000	0.000	0.000	0.000	1.090	0.077	0.335	0.166	0.250	0.000	0.000	0.000	0.040	0.000	0.000	0.000	0.000
90^thp	0.124	0.060	0.178	0.210	1.645	1.090	2.451	2.975	3.722	9.175	0.000	0.000	0.000	0.040	0.000	0.000	0.000	0.020
Stdev	0.083	0.194	0.915	0.198	0.993	0.000	1.018	1.167	1.783	4.618	0.214	0.000	0.007	0.000	0.124	0.035	0.151	0.564
Prev(%)	29.167	25.758	54.167	58.824	80.053	100.000	87.500	93.750	96.000	96.009	4.955	0.000	6.250	100.000	9.091	7.143	4.040	14.545

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