HOMD ::species::Prevotella vespertina

Species: Prevotella vespertina (HMT-306)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella vespertina

LINKS: Ecology Home | HMT-306: Body Sites Data | HMT-306: Taxon Description | Life Page: Prevotella vespertina

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.025	0.065	0.172	0.587	0.329	0.174	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.037	0.167	0.562	1.858	0.783	0.456	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.000	0.116	0.155	0.311	1.140	0.885	0.378	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	0.000	28.082	48.322	55.385	64.286	68.000	59.355	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.025	0.025	0.080	0.065	0.197	0.445	1.011	1.340	0.839	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.036	0.005	0.002	0.000
90^thp	0.030	0.037	0.223	0.165	0.455	0.842	2.340	1.764	0.927	0.000
Stdev	0.082	0.103	0.258	0.119	0.332	1.271	1.378	3.250	2.464	0.000
Prev(%)	45.946	44.118	60.465	74.286	82.143	86.000	96.970	93.548	90.000	0.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.005	0.002	0.072	0.000	0.050	0.080	0.351	0.532	0.857	0.361	0.026	0.000	0.000	0.000	0.000	0.000	0.002	0.001
10^thp	0.000	0.000	0.000	0.000	0.000	0.080	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.014	0.000	0.000	0.000	0.075	0.080	0.884	1.970	2.194	1.080	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.015	0.009	0.243	0.000	0.237	0.000	0.466	0.917	1.772	0.695	0.380	0.000	0.000	0.000	0.000	0.000	0.034	0.013
Prev(%)	12.500	4.545	8.333	0.000	19.681	100.000	50.000	43.750	52.000	63.850	0.901	0.000	0.000	0.000	0.000	0.000	0.505	1.091

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to P. sp. HMT 306 and P. sp. HMT 314 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.004	0.001	0.001	0.021	0.112	0.121	0.276	0.284	0.120	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.007	0.000	0.000	0.083	0.347	0.365	0.737	0.407	0.358	0.000
Stdev	0.017	0.004	0.005	0.053	0.199	0.180	0.461	1.217	0.169	0.002
Prev(%)	11.688	2.597	6.494	25.974	62.338	61.039	68.831	59.740	70.130	1.299

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to P. histicola and P. sp. HMT 306 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.025	0.018	0.021	0.239	0.607	1.067	1.324	1.060	1.055	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.016	0.013	0.050	0.323	1.483	2.809	3.199	2.502	2.728	0.000
Stdev	0.137	0.133	0.073	0.739	1.188	2.021	1.848	1.589	1.650	0.001
Prev(%)	16.892	14.189	25.000	59.459	79.054	84.459	86.486	83.108	81.081	1.399

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