HOMD ::Species:Leptotrichia wadei

Species: Leptotrichia wadei (HMT-222)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia wadei Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-222: Body Sites Data | HMT-222: Taxon Description | Life Page: Leptotrichia wadei

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to L. wadei and L. sp. HMT 417 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.387	0.286	0.077	0.072	0.104	0.073	0.571	0.399	0.294	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.785	0.888	0.025	0.213	0.383	0.216	2.010	1.226	0.852	0.000
Stdev	1.329	0.833	0.507	0.146	0.176	0.148	0.883	0.622	0.555	0.000
Prev(%)	50.649	50.649	23.377	51.948	72.727	57.143	88.312	81.818	76.623	0.000

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.357	0.462	0.034	0.077	0.092	0.083	0.272	0.227	0.152	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.577	1.352	0.021	0.230	0.211	0.210	0.624	0.727	0.253	0.000
Stdev	1.451	1.211	0.231	0.179	0.274	0.208	0.763	0.554	0.516	0.001
Prev(%)	44.595	51.351	12.162	45.270	39.865	40.541	55.405	58.108	50.000	0.699

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (BMU,HPA,PTO,SAL,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.373	0.337	0.084	0.066	0.014	0.033	0.023	0.030	0.000	0.000	0.004	0.004	0.020	0.020	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.027	0.954	0.017	0.189	0.040	0.068	0.040	0.045	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.221	0.917	0.573	0.205	0.049	0.110	0.123	0.102	0.000	0.000	0.033	0.036	0.103	0.125	0.000	0.000	0.000	0.000
Prev(%)	44.371	47.682	16.084	48.630	28.188	34.615	42.857	50.667	0.000	0.000	4.885	3.683	6.322	6.912	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (SAL,SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.479	0.520	0.101	0.185	0.026	0.039	0.029	0.036	0.013	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.303	1.418	0.085	0.343	0.069	0.092	0.082	0.077	0.036	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.391	1.306	0.541	0.780	0.091	0.132	0.089	0.161	0.045	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	52.346	52.927	19.012	45.658	19.949	33.631	28.037	27.737	22.141	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

Notes:
Reads equally close to HMT 222 and 417 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.850	2.563	0.098	0.358	0.165	0.028	0.086	0.048	0.045	0.003
10^thp	0.000	0.002	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.270	8.028	0.205	1.042	0.149	0.062	0.287	0.088	0.078	0.000
Stdev	2.884	5.318	0.255	0.938	0.658	0.066	0.182	0.150	0.092	0.011
Prev(%)	78.378	91.176	79.070	82.857	85.714	84.000	87.879	58.065	65.000	5.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.051	0.105	0.205	0.032	0.095	0.060	0.191	1.871	1.318	1.071	0.010	0.000	0.001	0.000	0.000	0.007	0.003	0.001
10^thp	0.000	0.000	0.000	0.000	0.000	0.060	0.000	0.010	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.130	0.220	0.240	0.108	0.250	0.060	0.646	4.415	2.536	3.155	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.091	0.429	0.719	0.053	0.260	0.000	0.289	4.249	2.685	2.054	0.114	0.000	0.004	0.000	0.000	0.027	0.048	0.016
Prev(%)	50.000	42.929	45.833	52.941	37.500	100.000	62.500	87.500	68.000	86.385	0.901	0.000	3.125	0.000	0.000	7.143	0.505	0.727

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