HOMD ::Species:Leptotrichia sp. HMT-909

Species: Leptotrichia sp. HMT-909 (HMT-909)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-909 Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-909: Body Sites Data | HMT-909: Taxon Description | Life Page: Leptotrichia sp. HMT-909

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.018	0.015	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.105	0.095	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	5.298	4.636	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.012	0.012	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.096	0.061	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	8.148	9.756	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.015	0.089	0.001	0.003	0.003	0.001	0.000	0.001	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.017	0.048	0.001	0.011	0.002	0.002	0.001	0.002	0.001	0.000
Stdev	0.081	0.381	0.004	0.005	0.014	0.002	0.001	0.003	0.001	0.000
Prev(%)	33.784	52.941	11.628	42.857	21.429	14.000	12.121	19.355	12.500	0.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.035	0.090	0.003	0.029	0.003	0.007	0.002	0.003	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.096	0.247	0.000	0.013	0.009	0.017	0.002	0.010	0.000	0.000
Stdev	0.089	0.237	0.019	0.204	0.011	0.021	0.008	0.008	0.005	0.000
Prev(%)	29.870	40.260	6.494	19.481	14.286	18.182	10.390	15.584	9.091	0.000

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.203	0.414	0.014	0.031	0.010	0.031	0.009	0.014	0.008	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.563	1.352	0.010	0.078	0.036	0.093	0.029	0.044	0.020	0.000
Stdev	0.423	0.666	0.087	0.075	0.022	0.050	0.020	0.032	0.027	0.000
Prev(%)	68.243	72.297	11.486	48.649	28.378	48.649	28.378	34.459	25.676	0.000

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