Species: Leptotrichia sp. HMT-225 (HMT-225)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-224 and HMT-225 were assigned to each taxon in proportion to the abundance of HMT-224 and HMT-225 individually at these sites (SUBP,SUPP).
Reads equidistant to HMT-224 and HMT-225 were assigned to each taxon in proportion to the abundance of HMT-224 and HMT-225 individually at these sites (SUBP,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.249 | 0.378 | 0.028 | 0.044 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.009 | 0.016 | 0.006 | 0.000 | 0.023 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.486 | 1.386 | 0.040 | 0.094 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.727 | 0.897 | 0.115 | 0.165 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.037 | 0.163 | 0.069 | 0.000 | 0.186 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 53.642 | 59.603 | 28.671 | 43.151 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 13.667 | 5.460 | 3.966 | 0.000 | 5.991 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-225 and HMT-563 were assigned to each taxon in proportion to the abundance of HMT-225 and HMT-563 individually at this body site (SUBP).
Reads equidistant to HMT-225 and HMT-563 were assigned to each taxon in proportion to the abundance of HMT-225 and HMT-563 individually at this body site (SUBP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.276 | 0.418 | 0.035 | 0.055 | 0.017 | 0.028 | 0.028 | 0.022 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.649 | 1.045 | 0.065 | 0.103 | 0.058 | 0.086 | 0.043 | 0.049 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.891 | 1.276 | 0.167 | 0.319 | 0.057 | 0.081 | 0.193 | 0.095 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 52.099 | 57.561 | 17.037 | 26.303 | 17.647 | 27.381 | 17.445 | 23.358 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to HMT 225 and 563 were assigned half to each taxon.
Reads equally close to HMT 225 and 563 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.789 | 1.616 | 0.048 | 0.124 | 0.205 | 0.020 | 0.086 | 0.021 | 0.016 | 0.001 |
| 10thp | 0.000 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.158 | 4.528 | 0.155 | 0.270 | 0.121 | 0.051 | 0.094 | 0.034 | 0.032 | 0.000 |
| Stdev | 1.953 | 3.666 | 0.092 | 0.266 | 0.799 | 0.036 | 0.287 | 0.049 | 0.035 | 0.005 |
| Prev(%) | 82.432 | 94.118 | 74.419 | 88.571 | 78.571 | 56.000 | 63.636 | 58.065 | 60.000 | 5.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
reads equally close to L. buccalis and L. sp. HMT 225 were assigned half to each taxon
reads equally close to L. buccalis and L. sp. HMT 225 were assigned half to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.340 | 0.639 | 0.026 | 0.038 | 0.015 | 0.027 | 0.023 | 0.017 | 0.005 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.132 | 2.236 | 0.023 | 0.095 | 0.047 | 0.071 | 0.036 | 0.049 | 0.017 | 0.000 |
| Stdev | 0.610 | 1.052 | 0.153 | 0.102 | 0.038 | 0.063 | 0.091 | 0.036 | 0.009 | 0.000 |
| Prev(%) | 59.740 | 61.039 | 24.675 | 49.351 | 28.571 | 31.169 | 37.662 | 42.857 | 25.974 | 0.000 |
Eren V3-V5 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.325 | 0.551 | 0.012 | 0.047 | 0.014 | 0.022 | 0.008 | 0.014 | 0.004 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.807 | 1.671 | 0.028 | 0.048 | 0.044 | 0.065 | 0.030 | 0.037 | 0.001 | 0.000 |
| Stdev | 0.791 | 1.343 | 0.050 | 0.372 | 0.041 | 0.056 | 0.022 | 0.039 | 0.013 | 0.000 |
| Prev(%) | 45.270 | 49.324 | 12.162 | 25.000 | 19.595 | 25.000 | 13.514 | 20.270 | 10.135 | 0.000 |
