HOMD ::Species:Leptotrichia sp. HMT-221

Species: Leptotrichia sp. HMT-221 (HMT-221)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-221 Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-221: Body Sites Data | HMT-221: Taxon Description | Life Page: Leptotrichia sp. HMT-221

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.020	0.017	0.021	0.097	0.304	0.129	0.759	0.646	0.864	0.000	0.003	0.000	0.032	0.015	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.015	0.021	0.033	0.240	0.834	0.346	2.058	1.920	2.365	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.107	0.091	0.089	0.278	0.616	0.272	1.718	1.199	1.940	0.000	0.021	0.000	0.196	0.102	0.000	0.000	0.000	0.000
Prev(%)	17.881	21.192	24.476	42.466	57.718	44.615	64.881	68.667	61.290	0.000	4.023	0.000	8.046	5.530	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.029	0.030	0.082	0.306	0.718	0.342	1.586	1.482	1.481	0.000	0.018	0.025	0.091	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.045	0.054	0.087	0.815	2.150	1.078	5.389	4.444	4.397	0.000	0.000	0.000	0.046	0.000	0.000	0.000	0.000	0.000
Stdev	0.147	0.155	0.715	0.917	1.460	0.662	3.107	2.828	2.821	0.000	0.150	0.321	0.543	0.000	0.000	0.000	0.000	0.000
Prev(%)	23.457	26.098	19.012	46.402	60.358	56.845	66.355	67.883	68.370	0.000	6.369	5.556	11.724	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.072	0.029	0.110	0.152	0.217	0.153	0.895	0.216	0.406	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.021	0.059	0.180	0.223	0.431	0.422	1.507	0.791	1.448	0.000
Stdev	0.377	0.084	0.417	0.512	0.651	0.340	2.205	0.446	0.825	0.000
Prev(%)	35.135	44.118	41.860	71.429	64.286	58.000	72.727	70.968	72.500	0.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.008	0.014	0.020	0.101	0.297	0.165	1.148	1.086	1.025	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.024	0.019	0.025	0.225	0.763	0.437	3.158	3.220	3.341	0.000
Stdev	0.029	0.053	0.080	0.261	0.544	0.321	2.278	2.045	1.965	0.003
Prev(%)	14.286	12.987	16.883	42.857	57.143	50.649	64.935	68.831	63.636	1.299

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.016	0.015	0.021	0.198	0.435	0.230	0.944	1.086	0.933	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.043	0.040	0.031	0.535	0.929	0.603	3.169	3.442	2.642	0.000
Stdev	0.099	0.043	0.086	0.506	1.008	0.509	1.487	1.828	2.074	0.001
Prev(%)	18.243	23.649	16.216	49.324	60.811	54.054	64.865	65.541	61.486	0.699

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